PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035092
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 567aa    MW: 59503.7 Da    PI: 9.7823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035092genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05628123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C+ C+k F r  nL+ H r H
  Lus10035092  6 FICEVCNKGFQREQNLQLHRRGH 28
                 89*******************88 PP
2zf-C2H212.60.0004383105123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+ k H +t+
  Lus10035092  83 WKCDKCSKRYAVQSDWKAHSKTC 105
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-7528No hitNo description
Gene3DG3DSA:3.30.160.606.3E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.99628IPR007087Zinc finger, C2H2
PfamPF121712.8E-5628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0052628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551104878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-571104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.51E-778103No hitNo description
SMARTSM0035514083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKNNK EVVKRKVYLC PEPTCVHHDP  60
SRALGDLTGI KKHYYRKHGE KKWKCDKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR  120
RDSFITHRAF CDALAQESAR NPPPPSLSSI GSHLYPRAGR GRQKNGAANN MSLGISSSSI  180
THDHTAADIL RLGGGGGGGG GGGGGQFDHL LPPTPSLGGG GSSSFRNPHL SSSSSAAAFF  240
MQDSDHGGHH QSQSNYQQYH HALLQQFSAA ADPNNTGGSG GNNNHNNNNL FNLGFLPNSS  300
TSIDNFNGGG GEVGGDHHHN QMMGLVGSSS STSTVPSLFN SSIHNHHQMS NMVAAHMSAT  360
ALLQKAAQMG STTSSNPNST TSASLLRSAF GAGGGGLSNT NNTTNPAATN NNKSSSSSSG  420
GGGEKNHPPP PSPALGGFGA SFFGDADANN GSNNLHDLMN SFSSPGNNNS SIFSSSNNSN  480
SKLLSGTSAG SDRLTRDFLG VGHAAAARGI ATNLTTGGFS SQPHQQQQQQ LGGAVERSSS  540
LDSERNNNNN SSMGSHSSFG GNPNFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-3379140364Zinc finger protein JACKDAW
5b3h_F7e-3379140364Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10035092
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014313.11e-149PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_011014314.11e-149PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_011014315.11e-149PREDICTED: zinc finger protein NUTCRACKER-like
TrEMBLA0A2K1ZH361e-146A0A2K1ZH36_POPTR; Uncharacterized protein
STRINGLus100350920.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-100indeterminate(ID)-domain 5