PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10035044 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 322aa MW: 36210.3 Da PI: 6.4579 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5e-06 | 127 | 146 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r n++ H+ Lus10035044 127 FSCPVCTKTFNRYNNMQMHM 146 89*****************9 PP | |||||||
2 | zf-C2H2 | 14.7 | 9.1e-05 | 212 | 234 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +CgksF + + ++H +++ Lus10035044 212 FGCRKCGKSFAVRGDWRTHEKNC 234 56*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.94E-5 | 123 | 149 | No hit | No description |
SMART | SM00355 | 0.085 | 127 | 149 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.3E-6 | 127 | 146 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.951 | 127 | 154 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 129 | 149 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 175 | 207 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.34E-6 | 195 | 232 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 199 | 232 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 73 | 212 | 232 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.58 | 212 | 232 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MQAPPFMTYI SSADHESSTL CCIEEEADLE QDRAREDSLL LLSLAPPGQQ QQHITTITKQ 60 PIKNHDPSST TIPSPSSDAG VTVALHIGPP PPPPTPTITS NHLGSATPPL EFWIPSPSQI 120 LVGPTQFSCP VCTKTFNRYN NMQMHMWGHG SQYRKGPESL RGTKPASSML RLPCYCCAEG 180 CKNNIEHPRS RPLKDFRTLQ THYKRKHGVK PFGCRKCGKS FAVRGDWRTH EKNCGKLWFC 240 ICGSDFKHKR SLKDHVRAFG DGHSPHTVDS LDHIDHVNEE DGDEEEEEEE EEEDSYEERE 300 DHDYGQRYST SIIGHRGPFS Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10035044 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021299830.1 | 1e-128 | zinc finger protein WIP6 | ||||
Swissprot | Q9FX68 | 1e-115 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | A0A2N9F1Q5 | 1e-131 | A0A2N9F1Q5_FAGSY; Uncharacterized protein | ||||
STRING | Lus10035044 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-109 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10035044 |