PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034999
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 525aa    MW: 58233.4 Da    PI: 6.6194
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034999genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.71.9e-35622081128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                  lp+G++F+Ptd+el+ e+L++kve+ +     +           +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+        
  Lus10034999  62 LPAGVKFDPTDQELI-EHLEAKVEEANgdmksH---PlidefipTIEGDdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqnescdf 154
                  799************.99*******99665551...144444433665546**********.555666799******************879999999 PP

          NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                    t + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Lus10034999 155 qsTGETRWHKTGKTRPVMV-NGSQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 208
                  999999*************.9999**********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-3855227IPR003441NAC domain
PROSITE profilePS5100532.9262227IPR003441NAC domain
PfamPF023654.9E-1663208IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MEMKSSMSSS TTSSKSNIGG STSTSHDLID AKLEEHQLCA SKHCPGCGHR LVKPSMQDWL  60
GLPAGVKFDP TDQELIEHLE AKVEEANGDM KSHPLIDEFI PTIEGDDGIC YTHPEKLPGV  120
TRDGLSRHFF HRPSKAYTTG TRKRRKIQNE SCDFQSTGET RWHKTGKTRP VMVNGSQKGC  180
KKILVLYTNF GKNRKPEKTN WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWVDRSS  240
TGTSSGSNVA AAAAVGGEGS IIGIDHHLIG SRRVDMSCSS REMINHHHHQ RESEFSEGVT  300
AAAVMSSYSS MDHHQHHFGF PNQFSKGFDH EVGSRGGGEA STAREGEQGC NELGHGDPHQ  360
QQQDQHAVAV IVGNHEINNA AATSFHMISR PSPPISNMIS PPPFHHASVV LDQDPYNVSR  420
LFLQNQLLHQ QQQQQEEEEQ HHKGAGEGRR SASGLEELIM GCTSSSTTSH DIKEESSIPN  480
PHEAEWLKFS SFWPSGPDNP DIYQNHARAL FPTTVFIFSI LEAY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034999
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076832.10.0protein BEARSKIN2 isoform X2
RefseqXP_021606174.10.0uncharacterized protein LOC110610523 isoform X2
TrEMBLA0A0M4FP360.0A0A0M4FP36_MANES; NAC transcription factors 71
STRINGLus100349990.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-128NAC domain containing protein 75