PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10034700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 208aa MW: 23545.8 Da PI: 8.6379 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.9 | 1.7e-22 | 40 | 180 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..lelee.v.ikevdiykvePwdLpkkvkaeekewyfFskrdkkya.....tgkrknratk..sgyWkatg 87 lp+G+rF+Ptd elv++yL +k+ + l+++ i+ ++ +++ P+dL + + e+ew+fF++ d ++a +g ++ra k g+W +g Lus10034700 40 LPVGYRFRPTDVELVKHYLMEKAFNPAspLPAFIgLdIDAFEFCSMTPSDLVPRSRRAEREWFFFVRLDLENAsnqnfEGMMSKRAGKkgVGFWI-SG 136 799*******************9988755333333359999**********656677899*******9988884444445577776552267898.68 PP NAM 88 kdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128 +k +++++g+l k L++ + ++++ +kt+W ++eyrl Lus10034700 137 LKKMIYDSTGALLAYKSELTYCvasTVSSSRQRKTHWKLDEYRL 180 88*******************977666888889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-24 | 34 | 197 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.926 | 40 | 199 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-15 | 41 | 180 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MGIVMEHDHD SAISHLQSSS PQPFEKEAAA EEISVPGGGL PVGYRFRPTD VELVKHYLME 60 KAFNPASPLP AFIGLDIDAF EFCSMTPSDL VPRSRRAERE WFFFVRLDLE NASNQNFEGM 120 MSKRAGKKGV GFWISGLKKM IYDSTGALLA YKSELTYCVA STVSSSRQRK THWKLDEYRL 180 HSPLNLRGQE WLLARLKRGS DYEKKYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-13 | 40 | 204 | 15 | 174 | Stress-induced transcription factor NAC1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10034700 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10034700 | 1e-154 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14439 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 9e-18 | NAC domain containing protein 58 |
Link Out ? help Back to Top | |
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Phytozome | Lus10034700 |