PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10034679 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | TCP | ||||||||
Protein Properties | Length: 360aa MW: 39373.7 Da PI: 7.144 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 90.9 | 2.8e-28 | 83 | 190 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................... 65 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WL+++ i++l+ + Lus10034679 83 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLGQPSKVIDWLIENTSDDIDKLPPLqlphsfgfeaasgggghlhqyynsslahmapffdf 180 78*************************************************************66666666666666666666665555555555555 PP TCP 66 .........s 66 + Lus10034679 181 grpgtststN 190 4443322211 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.519 | 84 | 142 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.1E-23 | 84 | 179 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MRRVPMKKDQ MEEQEGGAKQ EDNVGDHHQQ ENILTANLMN QPRTTAAAPP GGGSSSSTSR 60 STTSSQWSAF RNPRIVRVSR TFGGKDRHSK VCTVRGLRDR RIRLSVPTAI QLYDLQDRLG 120 LGQPSKVIDW LIENTSDDID KLPPLQLPHS FGFEAASGGG GHLHQYYNSS LAHMAPFFDF 180 GRPGTSTSTN TSASSSSGTS GLFDQQHLNS LYQWGDHHHN QNHYQNQLPI LGLGNNYGHD 240 HNHVSSSSGG SGGGGANFFL PSSYLALSNN TTNSASTSTT NSPHDQPTTM LMPPPPQPYS 300 AYNNQLEMMS DNHHQNYQRQ QQQLHFQNAT TTRPTPHFPF NIFNADNDHD DHGGGSSGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-19 | 89 | 143 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-19 | 89 | 143 | 1 | 55 | Putative transcription factor PCF6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10034679 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10034679 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 6e-47 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Lus10034679 |