PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034663
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MIKC_MADS
Protein Properties Length: 270aa    MW: 31428.7 Da    PI: 9.0726
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034663genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.61.2e-31959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Lus10034663  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                 79***********************************************96 PP
2K-box100.52.4e-338317310100
        K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  + ++++s +qe+ kLk+++e Lq++qR+llGedL+sL+ keL+qLe+qLe slk+iRs+K++++l+q+ el +ke++l e+n+aLr+klee
  Lus10034663  83 SLHETQSNYQEYLKLKARVEILQQSQRNLLGEDLGSLNTKELEQLEHQLEFSLKHIRSTKTQFMLDQLTELHNKEQDLLETNNALRRKLEE 173
                  4567899*********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.207161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-33278IPR002100Transcription factor, MADS-box
CDDcd002651.59E-43278No hitNo description
PRINTSPR004041.1E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-323859IPR002100Transcription factor, MADS-box
PfamPF014867.9E-2785171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.78587177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
PSMIKTLEKY HRCSYGALEA TRSLHETQSN YQEYLKLKAR VEILQQSQRN LLGEDLGSLN  120
TKELEQLEHQ LEFSLKHIRS TKTQFMLDQL TELHNKEQDL LETNNALRRK LEESNVYEMP  180
IRVVAWEDES SGGRSNSNVH NNIPYTHQLL PSQHHQNHHP CSEAFFHPLP PTSTLHMGYV  240
IHPATLITNR NNIYLRNEMH VQIQHHGRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A7e-27751731103Developmental protein SEPALLATA 3
4ox0_B7e-27751731103Developmental protein SEPALLATA 3
4ox0_C7e-27751731103Developmental protein SEPALLATA 3
4ox0_D7e-27751731103Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034663
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209505.11e-111MADS-box protein CMB1
SwissprotQ7Y0401e-104EJ2_SOLLC; MADS-box protein EJ2
TrEMBLQ4F8B31e-110Q4F8B3_PRUPE; MADS box protein
STRINGLus100346630.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-91MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]