PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034662
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27457.9 Da    PI: 8.4864
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034662genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.81.8e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl++ys+
  Lus10034662  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSPKGKLFDYST 59
                 79***********************************************96 PP
2K-box101.89e-34841731099
        K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  ++++  s++ e+akLk++ie Lq+++Rh+ Ge++++L+++eLq+LeqqL+++lk+iRs+Kn+l++e+i+elqkk k+lqe+n++L kk++
  Lus10034662  84 DTQTCGSWTLEYAKLKARIEVLQKNLRHYNGEEIDTLNIRELQNLEQQLDSGLKHIRSRKNQLMHESISELQKKDKALQEQNNQLAKKVK 173
                  5667789*********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.366161IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-33286IPR002100Transcription factor, MADS-box
CDDcd002651.05E-40279No hitNo description
PRINTSPR004047.1E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.59888178IPR002487Transcription factor, K-box
PfamPF014861.7E-2790172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSP KGKLFDYSTD  60
SCMESILERH ERHSYADRNL VLNDTQTCGS WTLEYAKLKA RIEVLQKNLR HYNGEEIDTL  120
NIRELQNLEQ QLDSGLKHIR SRKNQLMHES ISELQKKDKA LQEQNNQLAK KVKNREKEIV  180
SQEAQLEQQQ HPPQPFHHLD SSGDGGGYPG TGNTGEEEGS TSNHRANGGL LPSWMMSHHI  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-19174173MEF2 CHIMERA
6byy_B1e-19174173MEF2 CHIMERA
6byy_C1e-19174173MEF2 CHIMERA
6byy_D1e-19174173MEF2 CHIMERA
6bz1_A1e-19174173MEF2 CHIMERA
6bz1_B1e-19174173MEF2 CHIMERA
6bz1_C1e-19174173MEF2 CHIMERA
6bz1_D1e-19174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034662
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8309230.0EU830923.1 Linum usitatissimum clone LU0019B03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311552.11e-114agamous-like MADS-box protein AGL8 homolog
SwissprotQ424291e-107AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A1U8EMC21e-113A0A1U8EMC2_CAPAN; agamous-like MADS-box protein AGL8 homolog
TrEMBLQ9SEG71e-113Q9SEG7_CAPAN; Agamous-like MADS-box protein AGL8-like protein
STRINGLus100346621e-179(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-91MIKC_MADS family protein
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]