PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034620
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 375aa    MW: 40738 Da    PI: 8.4581
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034620genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.21.9e-104772227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 + ++C +++rtG C yG+rC+++H++
  Lus10034620 47 GFPNCVYYMRTGACGYGGRCRYNHPR 72
                 6799********************96 PP
2zf-CCCH40.93.5e-1394117427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C+f+++tGtCk+G++CkF+H++
  Lus10034620  94 PPCQFYLKTGTCKFGASCKFNHPK 117
                  79********************96 PP
3zf-CCCH37.83.2e-12138163227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++e+C+++++tG Ck+G +CkF+H++
  Lus10034620 138 DEEECSYYLQTGGCKFGITCKFHHPQ 163
                  789*********************97 PP
4zf-CCCH34.33.9e-11281307127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+++ +tG CkyG +C+++H++
  Lus10034620 281 PGEPECQYYIKTGDCKYGLSCRYHHPR 307
                  5799*********************96 PP
5zf-CCCH28.52.7e-09329352326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  + +C+f+++tG+Ck+  +CkF H+
  Lus10034620 329 MQPCSFYLQTGHCKFSYKCKFDHP 352
                  679********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-44572IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9154573IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-74772IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-64973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-45172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.09890118IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-790117IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-1094117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-694118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-595117IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4136163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.488136164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6137164IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9138163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4142162IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4280307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474280308IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7282307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6284309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4286307IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4326353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.122326354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5327353IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-7329352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-4330351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEPYGHNKAI DAPQLTEWSP AGAETGLEES MRGLGISSNE AYPERPGFPN CVYYMRTGAC  60
GYGGRCRYNH PRDRAAAEAT VRATGLFPER NGDPPCQFYL KTGTCKFGAS CKFNHPKHRG  120
GFLINVTLNT QGYPLRPDEE ECSYYLQTGG CKFGITCKFH HPQRADTTSA PQFYQPVQSP  180
SAAATNLRVR LPGTFMQGTY GPVLFSPGVV PIPGWSPYSA SVSPVQSPGA QTAVGATSLY  240
GVTQLTATTS AAPHRPYPSL LSSGALTSST QKEHYTFPER PGEPECQYYI KTGDCKYGLS  300
CRYHHPRDRV APITDSVLNP LGLPLRLGMQ PCSFYLQTGH CKFSYKCKFD HPIGGGAMRY  360
SPLASSLVDM PIAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034620
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021671117.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W911e-167C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2C9WP710.0A0A2C9WP71_MANES; Uncharacterized protein
STRINGLus100346200.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-166C3H family protein