PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034522
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 427aa    MW: 46817.4 Da    PI: 9.9721
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034522genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-05187209223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   C+ Cg+ F+ +++L+ H+r  H
  Lus10034522 187 ACSQCGEIFPKPESLELHQRIrH 209
                  6*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280186209IPR007087Zinc finger, C2H2
PROSITE profilePS501579.785186214IPR007087Zinc finger, C2H2
SuperFamilySSF563993.84E-18211423No hitNo description
Gene3DG3DSA:3.90.228.101.0E-5354423IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MAILTFYPEQ KTTTPKPKSK PKPKPPPTTP PPPHHRNKQP DHLNKKHPRP KHNKHHQPPS  60
SWVDQFKNLL TCKQIDSAAV HRPTKSTPAS SKLGGSSCSS ICSFKDVVHG NTRVVHRSDH  120
SPDTSSRALQ ESSLLTRNSK GVRYSSHTTP SSSLGRGMQF RKLSSCYECH TAIDPRRFPS  180
PRTTICACSQ CGEIFPKPES LELHQRIRHA VSELGPEDSG RNIVEIIFKS SWMKRDSSIC  240
KIERILKVHN TQRTIQRFED CRDAVKSRAV NSTRKNPRCA ADGNELLRFY CTTLTCSLGA  300
RGGSGICAAI PACGVCTAIR HGFQGKELRG VRTTASSGRA HDSLVVGCTG VEVRRAMLVC  360
RVIAGRVKRV SAAGEDSQED GGGYGGAYDS VAGCEGLYSN YLEELFVFNP KAILPCFVVI  420
YKAVES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034522
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021692743.10.0uncharacterized protein LOC110673836
TrEMBLB9R8800.0B9R880_RICCO; Nucleic acid binding protein, putative
STRINGLus100345220.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-147C2H2-like zinc finger protein