PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10034244
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 294aa    MW: 33039.6 Da    PI: 5.4136
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10034244genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY672.9e-21119180259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS.TTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed.pkvveitYegeHnhe 59 
                  +Dg +W+KYGqKe+ +++fprsY+rC+ +   gC+++k+v++ +++ +++  itY g+H+++
  Lus10034244 119 QDGQAWKKYGQKEILNAKFPRSYFRCSRKyeqGCKATKHVQKLEQEsTELYSITYVGHHTCS 180
                  79*************************988889*********876527899*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.5E-21116180IPR003657WRKY domain
SuperFamilySSF1182902.35E-19116180IPR003657WRKY domain
PROSITE profilePS5081115.457118177IPR003657WRKY domain
SMARTSM007748.7E-30118181IPR003657WRKY domain
PfamPF031062.0E-21119179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGSTPFLQTM QRKQQQEVIK ELVQGQQFAA QLQLLLQKND VHPSADELVV KILTSFTHAI  60
SALSADSGDN QDDSSASGLY EDSGESPKRR PPPAGKDNRG SYKRRKSGQC NIIISPTIQD  120
GQAWKKYGQK EILNAKFPRS YFRCSRKYEQ GCKATKHVQK LEQESTELYS ITYVGHHTCS  180
GNVPRAIPSI YPIATENETS ELSLAKNVKE ENCTVVKKDH DIMNNEQSMS GVTNDHNANM  240
WQDLVPLEPE ETINNYDYNS YCGYSDGAGS NFQNLDMDFL IKNVDFESDF RFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-19111179168OsWRKY45
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187105KRRPPPAGKDNRGSYKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10034244
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100342440.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-40WRKY DNA-binding protein 70