PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10034072 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 433aa MW: 48943 Da PI: 6.1341 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.9 | 1.9e-34 | 149 | 269 | 3 | 105 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.....sec..eaesssssasnsssg..... 88 +kk rhski T+ g RdRRvRls+ + ++fFdLqd+LGfdk+skt++WLl ++pai l +++ +++ +e e++++ +++++++ Lus10034072 149 KKKERHSKIETASGVRDRRVRLSIATSRKFFDLQDMLGFDKPSKTLDWLLSHSEPAIHRLQQLQLEQHptgdiMELenEDDEEDGDDDHDQEHeplll 246 79*************************************************************44444222222222222222222222222255666 PP TCP 89 ........kaaksaakskksqksaa 105 + ++ +k k++q++++ Lus10034072 247 nqhlqgraR--ETRTKDKQQQQQQQ 269 666665432..22222222222222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.1E-34 | 149 | 271 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.71 | 150 | 208 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 433 aa Download sequence Send to blast |
MFSSSGDGDV NNNNNNSSSP FRQLLQSGCS STMSDDQSRS RGLSSSSPYL MMFDDPEITT 60 TDQNTYPYPP NNNHGQLMTL PFLLPTYPYY NNNNIYPHLP PPPPPSVISC NYDCNNNNNP 120 NEMLTMMMMM SGGGSSSNST STMTMTTKKK KERHSKIETA SGVRDRRVRL SIATSRKFFD 180 LQDMLGFDKP SKTLDWLLSH SEPAIHRLQQ LQLEQHPTGD IMELENEDDE EDGDDDHDQE 240 HEPLLLNQHL QGRARETRTK DKQQQQQQQQ QQEPFGIGRV ISNSYNSLFT TATTTPPAST 300 QIDYESFTLM KWHLKHPESS LTTLATKNHA IPSPIFPHRH HHHHHQDSAN CTTTASTWDI 360 NASTGNYIIF SVSSDPKLHN CYSFVSTSLL ELLGSEGVQI GFICTYATTY RIGYAGLQLN 420 GRFWEERDHR NL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-15 | 155 | 208 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 9e-15 | 155 | 208 | 1 | 54 | Putative transcription factor PCF6 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10034072 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | Lus10034072 | 0.0 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67260.2 | 2e-23 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10034072 |