PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10033961

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

MYB_related

Protein Properties

Length: 1153aa MW: 127459 Da PI: 8.7773

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10033961	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.8	5.9e-09	46	78	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 +WT+eE e +++a +++G++ W+++a+ + R+ Lus10033961 46 KWTKEELECFYKAYRKHGKD-WEKVAAVVR-SRSV 78 8***************99.****999.8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.236	42	99	IPR017884	SANT domain
SuperFamily	SSF46689	8.22E-10	42	89	IPR009057	Homeodomain-like
SMART	SM00717	5.4E-5	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-4	46	77	IPR009057	Homeodomain-like
Pfam	PF00249	7.7E-8	46	79	IPR001005	SANT/Myb domain
CDD	cd00167	1.53E-6	46	81	No hit	No description
SMART	SM01135	3.1E-55	625	726	IPR033471	DIRP domain
Pfam	PF06584	2.5E-31	625	725	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1153 aa Download sequence Send to blast
MAPSRKSRSV NKRFSGIDEV DTNDDAEYAN KSRQKKRKWT GKLGPKWTKE ELECFYKAYR 60 KHGKDWEKVA AVVRSRSVGM VEALYSMNTA YLSLPKGYAS AAGLIAMMTD HYSNQVDSDS 120 EQEVNEGPST SHKPQKRART AKGSAVSPVT DLSKSISAAS NYGCLSLLKR RRSESRPWAV 180 GKRTPRVPVS YSYDKDNEER YISPIRQGLK LKGGAFDDDN NDDGDDDVAH RLALALTVAS 240 QRGPTPQVSQ TLTRKKGSSS SAQNGEQMRA DSEMTSAKLR CSEMDDSGCE LSLGSTEADT 300 GDYTRDKRFL KGKRYQRWRS EPEDSMDNHL DEIKEACSGT EEGQKPAGKG RFDMEVTNAK 360 LQRSSYDKVP KKRSKKVLFG EGEDIALDAL QTLADLSLRL PEDGTESSVH VQEGKTVNVA 420 KSKLKGNSPA SRIKVTPSKS NKQAKSTQNV IALPELEGSN QVNVGPRKRR NKPPQSKTSE 480 KEQHSGPNLG ESQKVKVVDD VNTSIDDAKP SHDATSGKQK RSTKVPERTS SNADPGRESN 540 DSGPSAAQAV SSNQVILPTK VRSRRKISTP KPLLEKDTKT CENITHGQSK ISIPSFPDRP 600 LPVKEKLSNC LSRRGLRQWC VFECFYSAID YPWFAKREFV EYLDHVGLGH IPRLTRVEWG 660 VIRGSLGKPR RFSRQFLKEE KKKLYQYRES VREHYTELRA GTREGLPTDL ARPLSVGQRI 720 IALHPRTREI HDGSVLTVDH NRCCVRFDQP ELGFEFVMDI DCMPLNPEEN LPASLTRHGL 780 GIKKYMENLN ECKTSASQAE NAMEGYIKFH QENLDATNGF SHIPPPNFHA LRQSQGLSLG 840 LATPVTAGFG ETINTQAANT QPSVHTHIQA KEADIQALSE LTRALEKKDA VVSELKRLNE 900 DVLESQNNGE KNNLRDSESF KKHYAALSSA LSSLRQRNTY QVITPAIPMM TTGDPILYYS 960 SFNPHPTEEV QDSGSHVAEI VESSRSKAQI MVDAAMQAVT SLNKEGSNIE SIEEAIDFVN 1020 NQLSVDNLTT QSSRPSHPEN STQGALGGSQ DQSSSGTANT EGNHTSDTKS SKNLSDLNEV 1080 QIPSDLISQS VATLLMIQKC TERQFPPSDI AQVLDSAVAN LKPSCSQNLP VYADIQKCMG 1140 IIRSQILALI PT*

Sequence ? help Back to Top

Protein Sequence Length: 1153 aa Download sequence Send to blast

MAPSRKSRSV NKRFSGIDEV DTNDDAEYAN KSRQKKRKWT GKLGPKWTKE ELECFYKAYR  60
KHGKDWEKVA AVVRSRSVGM VEALYSMNTA YLSLPKGYAS AAGLIAMMTD HYSNQVDSDS  120
EQEVNEGPST SHKPQKRART AKGSAVSPVT DLSKSISAAS NYGCLSLLKR RRSESRPWAV  180
GKRTPRVPVS YSYDKDNEER YISPIRQGLK LKGGAFDDDN NDDGDDDVAH RLALALTVAS  240
QRGPTPQVSQ TLTRKKGSSS SAQNGEQMRA DSEMTSAKLR CSEMDDSGCE LSLGSTEADT  300
GDYTRDKRFL KGKRYQRWRS EPEDSMDNHL DEIKEACSGT EEGQKPAGKG RFDMEVTNAK  360
LQRSSYDKVP KKRSKKVLFG EGEDIALDAL QTLADLSLRL PEDGTESSVH VQEGKTVNVA  420
KSKLKGNSPA SRIKVTPSKS NKQAKSTQNV IALPELEGSN QVNVGPRKRR NKPPQSKTSE  480
KEQHSGPNLG ESQKVKVVDD VNTSIDDAKP SHDATSGKQK RSTKVPERTS SNADPGRESN  540
DSGPSAAQAV SSNQVILPTK VRSRRKISTP KPLLEKDTKT CENITHGQSK ISIPSFPDRP  600
LPVKEKLSNC LSRRGLRQWC VFECFYSAID YPWFAKREFV EYLDHVGLGH IPRLTRVEWG  660
VIRGSLGKPR RFSRQFLKEE KKKLYQYRES VREHYTELRA GTREGLPTDL ARPLSVGQRI  720
IALHPRTREI HDGSVLTVDH NRCCVRFDQP ELGFEFVMDI DCMPLNPEEN LPASLTRHGL  780
GIKKYMENLN ECKTSASQAE NAMEGYIKFH QENLDATNGF SHIPPPNFHA LRQSQGLSLG  840
LATPVTAGFG ETINTQAANT QPSVHTHIQA KEADIQALSE LTRALEKKDA VVSELKRLNE  900
DVLESQNNGE KNNLRDSESF KKHYAALSSA LSSLRQRNTY QVITPAIPMM TTGDPILYYS  960
SFNPHPTEEV QDSGSHVAEI VESSRSKAQI MVDAAMQAVT SLNKEGSNIE SIEEAIDFVN  1020
NQLSVDNLTT QSSRPSHPEN STQGALGGSQ DQSSSGTANT EGNHTSDTKS SKNLSDLNEV  1080
QIPSDLISQS VATLLMIQKC TERQFPPSDI AQVLDSAVAN LKPSCSQNLP VYADIQKCMG  1140
IIRSQILALI PT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10033961

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021634970.1	0.0	protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A067KV21	0.0	A0A067KV21_JATCU; Uncharacterized protein
STRING	Lus10033961	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Lus10033961

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]