PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10033905

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 319aa MW: 36082.3 Da PI: 6.5068

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10033905	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.9	1.5e-47	12	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.lel.eevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrF P+deelv++yL kk+++++ +++ + ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kya g +nrat sgyWkatgkd++ ++ Lus10033905 12 LPPGFRFYPSDEELVCHYLLKKISDDHhNQVlKGTLVEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYAPGFSTNRATLSGYWKATGKDRTGVDPs 109 79*******************999953441445***********88888999******************************999876 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++e vg++ktLvfy++rap+g+kt W+mhe+rle Lus10033905 110 TKEIVGMRKTLVFYRNRAPNGTKTGWIMHEFRLE 143 7888*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-56	10	161	IPR003441	NAC domain
PROSITE profile	PS51005	55.354	12	161	IPR003441	NAC domain
Pfam	PF02365	4.1E-27	13	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MITGLRDIGA SLPPGFRFYP SDEELVCHYL LKKISDDHHN QVLKGTLVEI DLHTCEPWQL 60 PEVAKLNATE WYFFSFRDRK YAPGFSTNRA TLSGYWKATG KDRTGVDPST KEIVGMRKTL 120 VFYRNRAPNG TKTGWIMHEF RLESPHMPPK EDWVLCRVFH KSKTSEEEEY NNINKFSPPP 180 YHLVDTTITH NYHHTPPPIL TANLHPSSLT AHNHLPQLPG LTNSLSSSTI TAAAQPRQQS 240 CGVLLPAAGG SSLLSLLQDN SNNNNHSEIS SKPSSNNNNN AEDQFGFLWE DMNLEETSDF 300 EDIRSSFEIH HHDNMLFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-45	11	167	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-45	11	167	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-45	11	167	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-45	11	167	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-45	11	167	19	174	NAC domain-containing protein 19
3swm_B	1e-45	11	167	19	174	NAC domain-containing protein 19
3swm_C	1e-45	11	167	19	174	NAC domain-containing protein 19
3swm_D	1e-45	11	167	19	174	NAC domain-containing protein 19
3swp_A	1e-45	11	167	19	174	NAC domain-containing protein 19
3swp_B	1e-45	11	167	19	174	NAC domain-containing protein 19
3swp_C	1e-45	11	167	19	174	NAC domain-containing protein 19
3swp_D	1e-45	11	167	19	174	NAC domain-containing protein 19
4dul_A	1e-45	11	167	16	171	NAC domain-containing protein 19
4dul_B	1e-45	11	167	16	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10033905

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021630142.1	1e-114	protein CUP-SHAPED COTYLEDON 3-like
TrEMBL	A0A0M4G3S7	1e-113	A0A0M4G3S7_MANES; NAC transcription factors 94
STRING	Lus10033905	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4381	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	3e-90	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	Lus10033905