PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033857
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 356aa    MW: 39532.7 Da    PI: 10.4285
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033857genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.3e-31288345359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Lus10033857 288 DDFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 345
                  99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.5E-18239284IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.8E-33274346IPR003657WRKY domain
PROSITE profilePS5081129.631281347IPR003657WRKY domain
SuperFamilySSF1182907.06E-27284346IPR003657WRKY domain
SMARTSM007742.2E-38286346IPR003657WRKY domain
PfamPF031066.3E-27288345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEEVEAANRA AVESCNRVLN LLNQPQQEQV HYRNLMVETG EAVFKFKKVV SLLNTGLGHA  60
RVRKVKTLPA SLSHNILLDN PYQHTRADQP SKSHQFIKSS GYLETGSSSA AKTALCLGNS  120
SSLELSSSSN GKSPLQLVQQ TGHFQLLQQQ QLQRLQLQQR QQQQMKLQQA EMIFRRSNSG  180
ISLNFDSSSC TPTMSSTRSF ISSLSIDGSV TNMDGSGFRL MAAPRSSDQS SQQQQQHHKR  240
KCSARGEDGS VKCGSTGRCH CSKKRKHRVK RSIKVPAISN KLADIPPDDF SWRKYGQKPI  300
KGSPHPRGYY KCSSMRGCPA RKHVERCLEE PSMLIVTYEG EHNHPRIPAQ SANTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-202823491076WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033857
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8304561e-102EU830456.1 Linum usitatissimum clone LU0017D02 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520995.11e-180probable WRKY transcription factor 21
SwissprotO043361e-123WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLB9S4T81e-179B9S4T8_RICCO; WRKY transcription factor, putative
STRINGLus100338570.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-84WRKY DNA-binding protein 21