PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10033798 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 249aa MW: 26845.5 Da PI: 8.7652 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.5e-05 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ksFs+ L H +H Lus10033798 83 YSCKVCDKSFSTFQALGGHKASH 105 99**********99999888877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.66E-7 | 83 | 105 | No hit | No description |
PROSITE profile | PS50157 | 10.014 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.8E-12 | 83 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.021 | 83 | 105 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.66E-7 | 134 | 161 | No hit | No description |
Pfam | PF13912 | 8.0E-10 | 138 | 163 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 139 | 161 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.5 | 139 | 161 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 141 | 161 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MALEALNSPT TASTSKFNHQ QDDSWSKRKR SNRPRSSDDE YLAFCLLMLA RGKNNNPDSN 60 SNFNFKPLPT PPPLQTSSNQ LSYSCKVCDK SFSTFQALGG HKASHRKSSN SAADQNPTHP 120 PPASSAEIPS TSNNAARTHE CSICHKTFSC GQALGGHKRC HYEGTINHHK NSTTTTLTTT 180 TTQSQSRSQS RCDGLGFEFD LNLPASPELG SGEGSGAAKK SSREEEVESA LPVKKPRLSL 240 TLPVPHSD* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10033798 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458091.1 | 7e-65 | zinc finger protein ZAT10 | ||||
TrEMBL | A0A2K2C5R1 | 2e-63 | A0A2K2C5R1_POPTR; Uncharacterized protein | ||||
STRING | Lus10033798 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1327 | 32 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G27730.1 | 1e-26 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10033798 |