PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033676
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 488aa    MW: 53994 Da    PI: 8.5017
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033676genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.99.5e-24151551128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkd 89 
                  +ppG++F Ptd+e++v+yL +k++g+ +++++  ++++d+y   ePw++ +     +v + e+++yfF++ ++k+ tgkr  r +   +g+W+     
  Lus10033676  15 MPPGMKFCPTDQEMIVNYLYQKITGRLTSFQTEiVRDCDLYGDeEPWQIWEqykwsTVVNMEQNLYFFTRLKTKNITGKRILRRVGksDGTWHGEDAG 112
                  79***********************9966654439999**97659****6335555444467789***************988543349****99999 PP

          NAM  90 kevlsk......kgel..vglkktLvfykgrapkgektdWvmheyrl 128
                   +++++      +  +   g kk + +   + ++ ++  W+mhey+l
  Lus10033676 113 SKITCSvviggeE--VclLGYKKRFNYR--NPKSDQHGMWIMHEYSL 155
                  9999988885333..2559*******98..45555699*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-2312168IPR003441NAC domain
PROSITE profilePS5100524.22415175IPR003441NAC domain
PfamPF023652.6E-1716155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MNPPPNLAEI AKTLMPPGMK FCPTDQEMIV NYLYQKITGR LTSFQTEIVR DCDLYGDEEP  60
WQIWEQYKWS TVVNMEQNLY FFTRLKTKNI TGKRILRRVG KSDGTWHGED AGSKITCSVV  120
IGGEEVCLLG YKKRFNYRNP KSDQHGMWIM HEYSLPCTDY VVCRLKYSKS SVVSPPSPLP  180
PPPPPSIATG VSEMRPWISL VCGSGDEISS TCGETSKQGG KNGQVSGQIE VEKAKKDNSE  240
KQKNEKSVSA AEAKNDESTE SDGRKKVNED NENTAYAPEK PGLETEGSNS VEKNDLDDGE  300
TTSEKTEIAF AFVGCPVLES SDGKTKVEKK KIDPEMNDQK KGVAASAQAK NDLDKERGSS  360
DFKKNAQKKV VAASPLAKND LVKERGSSDF EKNVQAKGKK IYEKAKSGRE MNDFQRKGKA  420
TSVNALMDRL FKKDELVTKP LPKTGRGHGK RPSVELECTG EDEPTSNKGK KPRGSMDILI  480
EALGLHK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033676
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100336760.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-13NAC family protein