PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033665
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 310aa    MW: 34598.2 Da    PI: 8.9075
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033665genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.9e-10118140426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C+ f+r+G C++Gd+C FaHg
  Lus10033665 118 AVCPEFRRGGGCSRGDNCEFAHG 140
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.66E-6114144IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4114141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803115142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-6118142IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8118140IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.254150174IPR000571Zinc finger, CCCH-type
SMARTSM003564.3150173IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTTAAASIYS DHHPSSPTAK LPPRKLLVNR NNTVDFPQLD DMSSLAHFYK HLPCNKADQL  60
EEEEEDGDPY SSDQFRMYDF KVRRCTRSRS HDWTDCPFAH PGEKARRRDP RKFHYTGAVC  120
PEFRRGGGCS RGDNCEFAHG VFECWLHPLR YRTEACKDGK GCKRKVCFFA HSPRQLRLLP  180
PEKSSPTPPP PPLPRGGGPR RRGGWGFGKC RPPPSFLRML GLPWQRRRFL ISDIYSHRAV  240
PSLAAAVPFF FLVTACVTGE PPPSFSGGGD RVFSPTDEEA AAAAEDPPPR LCCGGSCSGV  300
VVSDFRPHR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033665
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573898.13e-77zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA11e-75C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLB9RVV61e-76B9RVV6_RICCO; Uncharacterized protein
STRINGLus100336650.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.18e-78C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]