PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033652
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 271aa    MW: 30867.6 Da    PI: 8.8632
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033652genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM545.6e-17221824127
          NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk............kvkaeekewyfFskrdkkya.tgkrknra.......tksg 81 
                   +rF+Pt+++lv ++L +k++g+  +  + i e+d+y +eP+ L +             v+ +++ +yf++k ++k+  +g+rk+          k g
  Lus10033652  22 AIRFRPTEKQLVGQFLLRKIRGTCDPD-DPIVEADLYATEPSLLWEtysssqeqshgaDVDDKDEILYFYTKLKSKKLsNGERKSSRidravadGKGG 118
                  68********************99777.89**************644667766655433333444559999976665436665543224444444489 PP

          NAM  82 yWkatgkdkevlsk......kgel...............vglkktLvfykgrapkgektdWvmheyr 127
                  +W++   +k  +++      k  +                  kk + + +  ++  e+  W+mhey+
  Lus10033652 119 TWHQEAVSKIYVRHhlvtkkK--NkqgsistgttttslmEFEKKRFSYKN-PENAKEHGCWIMHEYS 182
                  9**887755444436776541..145778888777777677888888874.444457999******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-187201IPR003441NAC domain
PROSITE profilePS5100519.81319202IPR003441NAC domain
PfamPF023653.1E-1322182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDADQIMENR KNFFASLNLS SAIRFRPTEK QLVGQFLLRK IRGTCDPDDP IVEADLYATE  60
PSLLWETYSS SQEQSHGADV DDKDEILYFY TKLKSKKLSN GERKSSRIDR AVADGKGGTW  120
HQEAVSKIYV RHHLVTKKKN KQGSISTGTT TTSLMEFEKK RFSYKNPENA KEHGCWIMHE  180
YSCLEKRAGF SIDWVICRLH KNPKYSRAKS SSSSMLLPSS PDSILDYDQH GGDDHRSNPK  240
RSKVINSATD DEQGRLKMAS YYQSFESCLQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033652
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100336520.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.12e-09Arabidopsis NAC domain containing protein 26