PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033644
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-other
Protein Properties Length: 278aa    MW: 31693.5 Da    PI: 9.2438
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033644genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.4e-193894157
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                 ++kR   t++qle+Le+ + +  yps+++r+ L+++lgL++rq ++WF+ rR k++k
  Lus10033644 38 KSKRKLKTAYQLEVLEKTYSEVAYPSEAARAGLSEQLGLSDRQLQMWFCHRRVKDRK 94
                 679999*************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-171398IPR009057Homeodomain-like
SuperFamilySSF466892.99E-163597IPR009057Homeodomain-like
PROSITE profilePS5007116.1473595IPR001356Homeobox domain
SMARTSM003893.1E-163799IPR001356Homeobox domain
PfamPF000461.7E-163894IPR001356Homeobox domain
CDDcd000861.07E-133896No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEDSGGARRR SSSPPAAGDA EVDQKKNRKT KKHDVENKSK RKLKTAYQLE VLEKTYSEVA  60
YPSEAARAGL SEQLGLSDRQ LQMWFCHRRV KDRKRQREDP PSPVEEIEAA SEACRKHSPA  120
SASRSNSLGM DPPPRPWSRS TSEVAVPRNC ADLSTVERYY EPRRSVAELR AMLFVEEQLE  180
EPMREDGPVL GVEFDPLPPD AFAEPMRTTA IVVHEAALAR HLGPNMYEQY DLKSIKQPKW  240
LSRDQWSSKR RSLHKQQMQT LNPSYKKYSD RSHSDDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12742RKTKKHDVENKSKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033644
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047699.13e-61PREDICTED: uncharacterized protein LOC105141971 isoform X2
TrEMBLA0A2K1X1X35e-59A0A2K1X1X3_POPTR; Uncharacterized protein
STRINGLus100336440.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15781611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.12e-41homeobox-1