PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033598
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 787aa    MW: 87234.3 Da    PI: 6.7227
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033598genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.3e-24129230199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae+       ++ +++ ++l+ +d++ ++W++k+i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ ++
  Lus10033598 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQTPPC-QELIARDLHDNEWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WTEKNQM 223
                  99****************************98555666.59************************************************..8889999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Lus10033598 224 LLGIRRA 230
                  **99997 PP
2Auxin_resp119.23.2e-39255338183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F++++nPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  Lus10033598 255 AAHAAATNSRFTIFFNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 338
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.94E-48114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-42122243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.49E-22128229No hitNo description
PfamPF023621.3E-21129230IPR003340B3 DNA binding domain
SMARTSM010195.9E-24129231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.182129231IPR003340B3 DNA binding domain
PfamPF065078.9E-34255338IPR010525Auxin response factor
PROSITE profilePS5174520.417718786IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MRLPSPGMNQ QAQDGGDSKC LNSELWHACA GPLVSLPNLG SRVVYFPQGH SEQVAASTNK  60
EVDAQIPNYP SLPPQLICQL HNVTMHSDVE TEEVYAQMTL QPLSPQEQKE VYLLPAELGA  120
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQTPPCQELI ARDLHDNEWK  180
FKHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVIFIWTEK NQMLLGIRRA NRPQTVMPSS  240
VLSSNSMHIG LLAAAAHAAA TNSRFTIFFN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDPVRWQ NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSP FPMRLKRPWP SGMPSFGLKD SDLSINAQLM WLQGLGDQGI QSMNFQGFGV  420
NPWLQPRLDT SIQALQPDVY QAMAAAALQE MRAVESSKLG SQSLLQFQAS QIVSNDPTAL  480
LQREMLQPPS NLQHAFLQNF QENQAMPQAQ LLQHHPVYND QQQRQKLPQE FQLQSRQVQQ  540
TQQPHQLPSQ HQTSNVVSSP SHLTSVNPPQ SASLQSQQLA FSVPVVNPVA TGDISSMHGV  600
MGSMIRDGAP NMFNGNGSNS GISSTLLSKQ VADGQHFSSE CVLPKVDPLS QSNASEHASL  660
LPPFPGREYS ANQGAIDPQH NTLFGVNIDS SSYMLQHGIA NMRNIGSESG SLSMPFSSTY  720
PNVHKSGSFG RSLDISTFSS YDELRVELAR LFGLEGQLED PQRSGWQLVF VDRENDVLLL  780
GDDPWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601335943388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033598
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307574.20.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA9PFL00.0A9PFL0_POPTR; Auxin response factor
TrEMBLB9H8680.0B9H868_POPTR; Auxin response factor
STRINGLus100335980.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]