PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033597
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 870aa    MW: 96553.5 Da    PI: 6.6394
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033597genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.3e-23129229198
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae+       ++ +++ ++l+ +d++ ++W++++ +r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ ++
  Lus10033597 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQTPPC-QELIARDLHDNEWKFRHVFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNEKNQM 223
                  99****************************98555666.59************************************************..8888889 PP

                  EEEEE- CS
           B3  93 vvkvfr 98 
                  +++++ 
  Lus10033597 224 LLGIRH 229
                  999886 PP
2Auxin_resp1193.7e-39255338183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F++++nPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  Lus10033597 255 AAHAAATNSRFTIFFNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 338
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-48114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-40122244IPR015300DNA-binding pseudobarrel domain
CDDcd100175.91E-22128221No hitNo description
PfamPF023629.4E-21129230IPR003340B3 DNA binding domain
SMARTSM010193.8E-23129231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012129231IPR003340B3 DNA binding domain
PfamPF065071.0E-33255338IPR010525Auxin response factor
SuperFamilySSF542771.63E-7748830No hitNo description
PfamPF023092.2E-6749841IPR033389AUX/IAA domain
PROSITE profilePS5174523.045756840IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MRLSSPGFNQ QAQEGGDNKC LNSELWHACA GPLVSLPTLG TRVVYFPQGH SEQVAASTNK  60
EVDAHIPNYP SLPPQLICQL HNVTMHSDIE TDEVYAQMTL QPLSPQEQKE VYLLPAELGA  120
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQTPPCQELI ARDLHDNEWK  180
FRHVFRGQPK RHLLTTGWSV FVSAKRLVAG DSVIFIWNEK NQMLLGIRHA NRPQTFMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFFN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDPVRWQ NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSP FPMRLKRPWP SGMPSFGLKD RDFNINSQLM WLQGLGDQGM QSMNFQGFGV  420
NPWLQPRLDA SIQALQPDVY QAMAAAALQE MRAVESSKLG SQSVMQFQPS QIVSNDPGAL  480
LQREMLQPSS NLQHAFLQNF QESQASTQAQ LIHQQLQRHP MYNDLQQQQK QPQHPPPQSR  540
QHQTSNVVSS LSHHTSANPS QSASLQSQQP AFSEPVVNPV AAGNVSSMHS VMGSMMRDGA  600
SNNMFNLNGS NGGGISSTLL SRQVADGQRF SPGIADCTLP KVDALSQSNA SEHATLLPPF  660
PGREYSAYQG TTDQQNNTLF GINIDSSSYM LQHGMGHMRS IGNGSDRLSM PFASAYPNAN  720
GSELPLNSDM TTSSCVDESG YLQSSENVDQ VNPPTRTFVK VHKTGSFGRS LDISTFSSYD  780
ELRVELARLF GLEGQLEDPQ RSGWQLVFVD RENDVLLLGD DPWQEFVNNV WYIKILSPVE  840
VQQMGKEGLS SVASIPPQKK LRNANIDDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1581335943388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033597
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307574.20.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLB9H8680.0B9H868_POPTR; Auxin response factor
STRINGLus100335970.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]