PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033477
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YB
Protein Properties Length: 243aa    MW: 27774.5 Da    PI: 6.7237
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033477genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1788.9e-5660155297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  +eqdrflPianv+rimkkv+P+n+kisk+aketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv plk yl+kyre+egek
  Lus10033477  60 KEQDRFLPIANVGRIMKKVIPGNGKISKEAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVGPLKSYLQKYREIEGEK 155
                  89*******************************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.2E-5254168IPR009072Histone-fold
SuperFamilySSF471137.14E-4062165IPR009072Histone-fold
PfamPF008088.5E-2865129IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.2E-1993111No hitNo description
PROSITE patternPS00685096112IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.2E-19112130No hitNo description
PRINTSPR006153.2E-19131149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEDDHQSHEN DRKPTTKRAR DQSLEGGSKI VINSDNNNDT NTTISDHNNN NNHHHQTSNK  60
EQDRFLPIAN VGRIMKKVIP GNGKISKEAK ETVQECVSEF ISFVTGEASD KCQREKRKTI  120
NGDDIIWAIT TLGFEDYVGP LKSYLQKYRE IEGEKLNLPK QQRVVEQRLP PQQYHHHHHQ  180
DVGDQSIHQT FDNVYSSINN LMSSSNFVPT DHQGFSLSFS SPTSSIPKHL QQHDELDSVR  240
HW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-4560150292Transcription factor HapC (Eurofung)
4g92_B8e-4560150292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033477
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630565.12e-87nuclear transcription factor Y subunit B-7
SwissprotQ9SIT94e-68NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A2C9UX024e-86A0A2C9UX02_MANES; Uncharacterized protein
STRINGLus100334770.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132492430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.13e-65nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]