PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033454
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 314aa    MW: 33919.3 Da    PI: 8.6301
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033454genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05137156120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++C+ C k+F+r  nL+ H+
  Lus10033454 137 FSCQVCFKTFNRYNNLQMHM 156
                  89*****************9 PP
2zf-C2H211.60.00086221243123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +Cgk+   k + ++H +++
  Lus10033454 221 FVCRKCGKPLAVKGDWRTHEKNC 243
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-5125159No hitNo description
PROSITE profilePS5015710.201137164IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-4137156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SuperFamilySSF576673.31E-5203241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEPSSELCVI SSCMYSCSLA GGGSASSSSS SSSSSSSTNP MIKALDLFPG ATDSSSATSP  60
PVDSYLAPLD LVSKLQKPHD EDVTVALQIG LPDHRHPDHR DKYCSSMDNV PIAANNVASS  120
QYWIPTHEQI LIGFTHFSCQ VCFKTFNRYN NLQMHMWGHG SQYRKGPESL KGTQPRFMMG  180
VPCYCCAAGC KNNIEHPRAK PLKDFRTLQT HYKRKHGVKP FVCRKCGKPL AVKGDWRTHE  240
KNCGKRWLCV CGSDFKHKRS LKDHVKAFGS GHGSLVSSSN SPSSNCSSSF DAGGGGVDMM  300
VHDNVGSSST SGV*
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033454
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021900772.11e-121protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-107TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A2C9WFL21e-119A0A2C9WFL2_MANES; Uncharacterized protein
STRINGLus100334540.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-103C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]