PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033251
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 565aa    MW: 62804.4 Da    PI: 4.7909
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033251genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.1e-5291401127
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+d++k+ePwdLp  + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++ s+ 
  Lus10033251   9 LPLGFRFRPTDEELINHYLRLKINGRDSEV-EVIPEIDVCKWEPWDLPglSVIKTDDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGKDRTIRSRr 105
                  699************************999.99***************6447888899**************************************97 PP

          NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyr 127
                     +   +g+kktLvfy+grapkge+++W+mheyr
  Lus10033251 106 pgsTPVSIGMKKTLVFYRGRAPKGERSNWIMHEYR 140
                  6555555***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-593164IPR003441NAC domain
PROSITE profilePS5100555.8769164IPR003441NAC domain
PfamPF023652.6E-2710140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MAVISMQSLP LGFRFRPTDE ELINHYLRLK INGRDSEVEV IPEIDVCKWE PWDLPGLSVI  60
KTDDPEWFFF CPRDRKYPNG HRSNRATEAG YWKATGKDRT IRSRRPGSTP VSIGMKKTLV  120
FYRGRAPKGE RSNWIMHEYR PTLEDLDGTG PGQAPFVLFR LFRKPEEKVD VVKYDEVEQT  180
GYSPTTTKSS PDEATSELVQ ETATSGMRGG KQSDTLLESM TPTTAFVPAD SSCNSHMNSD  240
VEDHVTELTV EEANALVDGS SHPYEFTSGE VDYKMFSPMQ PHPYGDLGLH FDSHYDNDFG  300
NDLNGFQFQD GTSEQDVSLT ELLDEVFHND DLSFEEASSD KNLGLLPESF HVRNWELHNN  360
MDAKMVQAQM ESASRSSFAQ TGFFTRESGN RNIGGNGDCF VTQATHPANS ATNTSFGMSH  420
PMENPVSNAN DGGTGIKIRQ RQPRARASDN FVGQGTAARR LRLQSRLGDT SCVEDEDEVQ  480
STLTEGQDAK EGDEAIGDDQ MKEGPVVKQN LRLRLKGNDK SEHGGSISQT YEKNGSAIRS  540
TWVIGLSGVV FLVAGMVGIC RCLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-42416415168NAC domain-containing protein 19
3swm_B2e-42416415168NAC domain-containing protein 19
3swm_C2e-42416415168NAC domain-containing protein 19
3swm_D2e-42416415168NAC domain-containing protein 19
3swp_A2e-42416415168NAC domain-containing protein 19
3swp_B2e-42416415168NAC domain-containing protein 19
3swp_C2e-42416415168NAC domain-containing protein 19
3swp_D2e-42416415168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033251
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020539598.10.0protein NTM1-like 9 isoform X2
TrEMBLR4NEW20.0R4NEW2_JATCU; NAC transcription factor 055
STRINGLus100332510.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-133NAC transcription factor-like 9