PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033239
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 421aa    MW: 47026.8 Da    PI: 6.1515
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033239genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.4e-52161451128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPt+eel+++yL+kkv+++k++l +vi+evd++k+ePwd+++  k+ + ++++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s 
  Lus10033239  16 VPPGFRFHPTEEELLHYYLRKKVASDKIDL-DVIREVDLNKLEPWDIQErcKIGSaQQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKIIYSG 112
                  69****************************.9***************953433333667*************************************** PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++ +gl+ktLvfy+grap+g+k+dW+mheyrl
  Lus10033239 113 NRRRIGLRKTLVFYQGRAPHGQKSDWIMHEYRL 145
                  *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-5712185IPR003441NAC domain
PROSITE profilePS5100556.7416185IPR003441NAC domain
PfamPF023656.2E-2717145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAGDHVNLSI NGQSTVPPGF RFHPTEEELL HYYLRKKVAS DKIDLDVIRE VDLNKLEPWD  60
IQERCKIGSA QQNDWYFFSH KDKKYPTGTR TNRATTAGFW KATGRDKIIY SGNRRRIGLR  120
KTLVFYQGRA PHGQKSDWIM HEYRLDDTDH NTSLFSPGLS NCGNYVIGGE GGSEDGWVVC  180
RVFRKKNYHK TNESPRSCSS PYSSMIIHHN QPDSKSRIIG NSDDWVMDQI LMYMDTKSSN  240
GGRIEIQESF MHLPKLVTDH QQQQGGTSTM NTSSKGMVTA AATTESNNIN NKDEFNINIS  300
NDNNGSYYYN NEASSNNRAS GFDVTAAAAA SGDNRSMMMT TSTEDHVIND WIALDRLVAS  360
QLNAAGGDDE DEVGVILRGD GDQLARQQLL VYDDNDIWTS FTKSSSSPTS SSDPLCHLSV  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-461118710170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:17890373}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033239
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518924.11e-129NAC domain-containing protein 43
SwissprotQ9LPI71e-105NAC12_ARATH; NAC domain-containing protein 12
TrEMBLB9RYV51e-128B9RYV5_RICCO; NAC domain-containing protein, putative
STRINGLus100332390.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30313374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32770.15e-95NAC domain containing protein 12
Publications ? help Back to Top
  1. Zhao Q, et al.
    Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis.
    Phytochemistry, 2015. 112: p. 170-8
    [PMID:25107662]
  2. Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
    Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
    J. Plant Physiol., 2015. 175: p. 86-94
    [PMID:25506770]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Huang J,Chen F,Wu S,Li J,Xu W
    Cotton GhMYB7 is predominantly expressed in developing fibers and regulates secondary cell wall biosynthesis in transgenic Arabidopsis.
    Sci China Life Sci, 2016. 59(2): p. 194-205
    [PMID:26803299]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]