PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033192
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 595aa    MW: 66481.4 Da    PI: 5.8206
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033192genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.21.9e-103634001954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   n+yp+++e+  LAk++gL+++qV +WF N R +
  Lus10033192 363 FEHflNPYPNESEKNMLAKQTGLSKNQVANWFINARVR 400
                  664459******************************88 PP

2BELL105.14.6e-34225297172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFea.vaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e+q+lq+kk+kL+s+++eVdkrYkqy++q+q++iss ++ vag g+ak Yt lAl++iSr FrcL+dai +qi
  Lus10033192 225 EKQDLQAKKSKLMSMVDEVDKRYKQYYHQMQALISSMDTvVAGNGAAKAYTWLALHTISRRFRCLRDAIENQI 297
                  6899*********************************97368*****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.0E-41159295IPR006563POX domain
PfamPF075262.6E-40166293IPR006563POX domain
PROSITE profilePS5007113.216341404IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-27343414IPR009057Homeodomain-like
SMARTSM003893.8E-10344408IPR001356Homeobox domain
CDDcd000861.77E-13344405No hitNo description
SuperFamilySSF466891.45E-17345411IPR009057Homeodomain-like
PfamPF059205.5E-18361400IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MATYYSSIDN LHTSSSSCDT NHLISSSNSA SIHHDQQLLP HNYHSDQFGS RNEMMMFIPP  60
INDHNNAPDQ VVDIPNLIQD SDSFHIQGGL SLSLGTQMME TSSSVVSVPP PPPSSSYDNN  120
NYHQYLVEAE DQDQQLIHIK MEGHHPIPPP QFYQTTSTMG YANVSVLNSN YLKVTHELLD  180
EVVNVKYALT HQVPADDKCS DKEGNNDGAA ESGVESSASE LSPSEKQDLQ AKKSKLMSMV  240
DEVDKRYKQY YHQMQALISS MDTVVAGNGA AKAYTWLALH TISRRFRCLR DAIENQIEVI  300
RKKLGEQQGA QGQGGIPRLR YIEQQLKQER STLHQHLGVM RHSWRPQRGL PENSVSLLRA  360
WLFEHFLNPY PNESEKNMLA KQTGLSKNQV ANWFINARVR LWKPMVEEMY KEECGGGESD  420
DNSNKSSNYN NEAKRGRHYN QLHDPNYDLD ANNSLLVVAD HELQDTAAVT TSSTVPADQL  480
IHYFHSDHLD HDQINGQGQL HQYVEDQTQN SSMPPLNLNT AVGDGSLMSA AVQYGGVSAS  540
TGLIIPHVSL ALGLQHNETD DGGLVHDDDS FHHSRFGNTV HSFHDFVVSK NPCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-15350408563Homeobox protein Meis2
3k2a_B8e-15350408563Homeobox protein Meis2
4xrm_A7e-15350408563Homeobox protein Meis2
4xrm_B7e-15350408563Homeobox protein Meis2
4xrs_A7e-15350407158Homeobox protein Meis1
4xrs_B7e-15350407158Homeobox protein Meis1
5bng_A8e-15350408159Homeobox protein Meis2
5bng_B8e-15350408159Homeobox protein Meis2
6fqp_A2e-143454081882Homeobox protein TGIF1
6fqp_B2e-143454081882Homeobox protein TGIF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033192
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FWS91e-110BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLB9R8031e-111B9R803_RICCO; Bel1 homeotic protein, putative
STRINGLus100331920.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.24e-98BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]