PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10033192 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | TALE | ||||||||
Protein Properties | Length: 595aa MW: 66481.4 Da PI: 5.8206 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.2 | 1.9e-10 | 363 | 400 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yp+++e+ LAk++gL+++qV +WF N R + Lus10033192 363 FEHflNPYPNESEKNMLAKQTGLSKNQVANWFINARVR 400 664459******************************88 PP | |||||||
2 | BELL | 105.1 | 4.6e-34 | 225 | 297 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFea.vaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+q+lq+kk+kL+s+++eVdkrYkqy++q+q++iss ++ vag g+ak Yt lAl++iSr FrcL+dai +qi Lus10033192 225 EKQDLQAKKSKLMSMVDEVDKRYKQYYHQMQALISSMDTvVAGNGAAKAYTWLALHTISRRFRCLRDAIENQI 297 6899*********************************97368*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.0E-41 | 159 | 295 | IPR006563 | POX domain |
Pfam | PF07526 | 2.6E-40 | 166 | 293 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 13.216 | 341 | 404 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 343 | 414 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.8E-10 | 344 | 408 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.77E-13 | 344 | 405 | No hit | No description |
SuperFamily | SSF46689 | 1.45E-17 | 345 | 411 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.5E-18 | 361 | 400 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MATYYSSIDN LHTSSSSCDT NHLISSSNSA SIHHDQQLLP HNYHSDQFGS RNEMMMFIPP 60 INDHNNAPDQ VVDIPNLIQD SDSFHIQGGL SLSLGTQMME TSSSVVSVPP PPPSSSYDNN 120 NYHQYLVEAE DQDQQLIHIK MEGHHPIPPP QFYQTTSTMG YANVSVLNSN YLKVTHELLD 180 EVVNVKYALT HQVPADDKCS DKEGNNDGAA ESGVESSASE LSPSEKQDLQ AKKSKLMSMV 240 DEVDKRYKQY YHQMQALISS MDTVVAGNGA AKAYTWLALH TISRRFRCLR DAIENQIEVI 300 RKKLGEQQGA QGQGGIPRLR YIEQQLKQER STLHQHLGVM RHSWRPQRGL PENSVSLLRA 360 WLFEHFLNPY PNESEKNMLA KQTGLSKNQV ANWFINARVR LWKPMVEEMY KEECGGGESD 420 DNSNKSSNYN NEAKRGRHYN QLHDPNYDLD ANNSLLVVAD HELQDTAAVT TSSTVPADQL 480 IHYFHSDHLD HDQINGQGQL HQYVEDQTQN SSMPPLNLNT AVGDGSLMSA AVQYGGVSAS 540 TGLIIPHVSL ALGLQHNETD DGGLVHDDDS FHHSRFGNTV HSFHDFVVSK NPCF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 8e-15 | 350 | 408 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 8e-15 | 350 | 408 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 7e-15 | 350 | 408 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 7e-15 | 350 | 408 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 7e-15 | 350 | 407 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 7e-15 | 350 | 407 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 8e-15 | 350 | 408 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 8e-15 | 350 | 408 | 1 | 59 | Homeobox protein Meis2 |
6fqp_A | 2e-14 | 345 | 408 | 18 | 82 | Homeobox protein TGIF1 |
6fqp_B | 2e-14 | 345 | 408 | 18 | 82 | Homeobox protein TGIF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10033192 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9FWS9 | 1e-110 | BLH3_ARATH; BEL1-like homeodomain protein 3 | ||||
TrEMBL | B9R803 | 1e-111 | B9R803_RICCO; Bel1 homeotic protein, putative | ||||
STRING | Lus10033192 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2146 | 31 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75410.2 | 4e-98 | BEL1-like homeodomain 3 |
Link Out ? help Back to Top | |
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Phytozome | Lus10033192 |
Publications ? help Back to Top | |||
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