PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10033187 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 229aa MW: 26466.3 Da PI: 9.9339 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.9 | 7.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKA+EL vLCda+v++i+fsstgkl+e++s Lus10033187 9 KRIENSTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEFIS 59 79***********************************************86 PP | |||||||
2 | K-box | 87.3 | 3.1e-29 | 71 | 170 | 1 | 100 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 yq++ g++ +++++e++q +l+kLk+ ++ L++e+R+++Ge+L++L++ +++ L ++++++k iR++Kn+++++qie+++k+ ++++e++++L + + Lus10033187 71 YQRTLGVDIWTTHYEKMQDHLKKLKDVNRDLRKEIRRRMGECLNDLEFDQMRALDMEMDNAVKIIRERKNQVIFNQIERQKKMVRNVEEIHRNLLHAF 168 67788899**************************************************************************************9998 PP K-box 99 ee 100 +e Lus10033187 169 QE 170 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.338 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.40E-40 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 4.8E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-36 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.1E-18 | 82 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.72 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MARGKIQIKR IENSTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMFSS TGKLHEFISP 60 AATTKGMLDQ YQRTLGVDIW TTHYEKMQDH LKKLKDVNRD LRKEIRRRMG ECLNDLEFDQ 120 MRALDMEMDN AVKIIRERKN QVIFNQIERQ KKMVRNVEEI HRNLLHAFQE REEDPHYGLV 180 DNGGGYEPAV VGFPTGGSRV FALRLNHHNL HTATTATGSD LTTFHLLE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-15 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 2e-15 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 2e-15 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 2e-15 | 1 | 59 | 1 | 59 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10033187 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028059352.1 | 1e-114 | floral homeotic protein DEFICIENS isoform X1 | ||||
Swissprot | P23706 | 1e-110 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | A0A0P0I7J5 | 1e-117 | A0A0P0I7J5_MERAN; Apetala 3-like protein | ||||
STRING | Lus10033187 | 1e-171 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 1e-88 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10033187 |
Publications ? help Back to Top | |||
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