PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033151
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family E2F/DP
Protein Properties Length: 391aa    MW: 43618.8 Da    PI: 6.5141
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033151genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP88.45.2e-28155220171
      E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  r+++sL+llt+kf+kl++++++g+++ln+ a+ L   +v  ++RRiYDi+NVLe++nliek++kn+i+wkg
  Lus10033151 155 RYDSSLGLLTKKFVKLIQEAKDGTLDLNKTAEVL---EV--QKRRIYDITNVLEGINLIEKTSKNHIQWKG 220
                  6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-29152221IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.3E-18155218IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-35155220IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.3E-26157220IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.13E-32234339No hitNo description
SuperFamilySSF1440742.88E-25235338No hitNo description
PfamPF164214.2E-23236336IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MAAMANAAQD SKPSAPLPSP SSQFQFQLLH SHPHFLTPNL KNIAPPSFPS PNRIFAPPLP  60
APPSTFADLS IHHRPYITPP NTLQPAPDAC SAELMQTSER ENYNAQNEGL VNMIPVNTPT  120
KGKYSKGKAS KPRKSGPKNL NPDCVDGQNS ANGCRYDSSL GLLTKKFVKL IQEAKDGTLD  180
LNKTAEVLEV QKRRIYDITN VLEGINLIEK TSKNHIQWKG SGGSGTKDFN YVASRLKAEV  240
DGLHSQESRL DQAIREAQER LRRLQEDQHN QKYLFLTKED VVNLPCFQNS TLIMVKAPHA  300
SNLEVDDPVD DEQDFNSHHY RMTVRSVTGP IDLHLLSSDQ VKDEVEMQTS DNGGYDTSGV  360
QRIRPSYDNI EDDYWFRSNK QVSLSELWGE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A4e-24155222775PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033151
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020535390.11e-102transcription factor E2FC isoform X1
TrEMBLA0A067KXD42e-99A0A067KXD4_JATCU; Uncharacterized protein
STRINGLus100331510.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.23e-79E2F/DP family protein