PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033148
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 434aa    MW: 47201.6 Da    PI: 9.8325
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033148genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013198220223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   C+ Cg  F+ +++L+ H+r  H
  Lus10033148 198 ACSQCGDIFPKPESLELHQRIrH 220
                  6*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280197220IPR007087Zinc finger, C2H2
PROSITE profilePS501579.556197225IPR007087Zinc finger, C2H2
SuperFamilySSF563996.47E-20222430No hitNo description
Gene3DG3DSA:3.90.228.103.6E-6358430IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAILTFYPEQ NITTPKPKPK PKPPSTTATP PPPSRNRHKQ PDLNKKHPKP KHKHHQPPSS  60
SSSSSSWVDQ FKNLLTCKQI DSAAVHLPTK STPASSKIGG SSCSSICSFK DVVHGNTRVV  120
HRSDHSPNTS SRSLQDSSLL ITRNKLGASS TSGAVRYSSH TTPSLGRGMQ FRKLSSCYEC  180
HTAIDPCRFP SPRTTICACS QCGDIFPKPE SLELHQRIRH AVSELGQEDS GRNIVEIIFK  240
SSWMKKDSSI CKIERILKVH NTQRTIQRFE DCRDAVKSRA VNSTRRNPRC AADGNELLRF  300
YCTSLTCSLG ARGGSSICAA IPACGVCTAI RHGFQGKELR GVRTTASSGR AHDSLVVGVE  360
RRAMLVCRVI AGRVKRVSAA GEDSQEDGGG YGGAYDSVAG CDGLYSNYLE ELFVFNPKAI  420
LPCFVVIYKA VES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033148
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8883105e-58HQ888310.1 Linum usitatissimum clone GMU2AYZ01BHW4Q microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021692743.10.0uncharacterized protein LOC110673836
TrEMBLB9R8800.0B9R880_RICCO; Nucleic acid binding protein, putative
STRINGLus100331480.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-143C2H2-like zinc finger protein