PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033094
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 392aa    MW: 44965.3 Da    PI: 4.1664
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033094genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.52.6e-11122204186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++qe  +L+e+  e+  +l+r++l+  +W ev++k+ +e +++r   qC+  +++l++ry+k+k+  +     ++s+++++++++
  Lus10033094 122 EWSEQEKFVLLEVWGERFLQLGRNSLRSIDWVEVAEKVsEELKIKRREAQCRLLMDSLKRRYRKEKAKGGH----VVSKWAFYRKMD 204
                  5*************************************8889************************99997....5889******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.4E-18122206No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDHAEDDGRY SHKAYPHNRT TKKSSMYSHR PVSSFYNRHD YAGNDDPEED EEDDFDDNGM  60
ESDDNNNIGR DYPNDYEEKD GFGRYPKRQK KVKNSVSNNY ELVPRSRMAS NNNNGESDFS  120
GEWSEQEKFV LLEVWGERFL QLGRNSLRSI DWVEVAEKVS EELKIKRREA QCRLLMDSLK  180
RRYRKEKAKG GHVVSKWAFY RKMDMLMRQE NGSVGSSSGG FSLSCGVDSG EYVFMDTGVY  240
LERANGFDEM RDSPCESEEE DDDEEDDDDK GEVSGDMFKG LTVLADSVHK FGEIYEKIES  300
SKRDQMLELE RMRVDFQREL ELQKKQILER AQTEISKIRD EDDGDDDEEE EEDTDTDSDA  360
AADGVNDNGD GEAIESDNES GDDDLGVNVS E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033094
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076661.11e-116trihelix transcription factor ASIL2
RefseqXP_012076662.11e-116trihelix transcription factor ASIL2
RefseqXP_020536412.11e-116trihelix transcription factor ASIL2
RefseqXP_020536413.11e-116trihelix transcription factor ASIL2
TrEMBLA0A067KF821e-115A0A067KF82_JATCU; Uncharacterized protein
STRINGLus100330940.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.19e-71Trihelix family protein