PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10033000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 523aa MW: 57017.2 Da PI: 6.9327 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.6 | 1.1e-32 | 241 | 297 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYG K++kgse+prsYY+Ct+++Cpvkkkvers d++++ei+Y+g+Hnhe Lus10033000 241 DDGYNWRKYGHKPIKGSEYPRSYYKCTHPNCPVKKKVERSG-DGQITEIIYKGQHNHE 297 8***************************************9.***************7 PP | |||||||
2 | WRKY | 33.2 | 1e-10 | 435 | 463 | 31 | 59 |
T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 31 gCpvkkkversaedpkvveitYegeHnhe 59 +C+v+k+ver+a dpk+v++tYeg+Hnh+ Lus10033000 435 RCNVRKHVERAAADPKAVITTYEGKHNHD 463 6***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 24.398 | 235 | 299 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.8E-30 | 237 | 299 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.49E-26 | 239 | 299 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-37 | 240 | 298 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-25 | 241 | 297 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-10 | 412 | 465 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.431 | 415 | 465 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-7 | 420 | 464 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.4E-10 | 435 | 465 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-6 | 435 | 463 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MAEKRDSSPS AALPRPTITL PPRPPMDTFF SGGLSPGPMT LVSSFFSDSY PGDSDGRSFS 60 QLLAGAMASP LARPSFFPEF SPRVPAASSS TALSSTEDVA PGTTGGFGFK QSRPMNLVVP 120 RSPLFTVPPG LSPSGLLNSP GFFPPQSPFG MSHQQALAQV TAQAAIAAQS QMYMQAQFHP 180 SSIAGSAEVL PVQQSYTTAE DSHWQMPQTT SNLQNTVLEP SEFSHSEKYQ PLPPAVDKPS 240 DDGYNWRKYG HKPIKGSEYP RSYYKCTHPN CPVKKKVERS GDGQITEIIY KGQHNHELPQ 300 SNKRARDSSD QNVSISSQFK TEPVPQGQPG DANMLHEITP AYSESGRDQE SRQMDPTEQP 360 AHSSYRRAED QIANEQEAAD NAPNLKRRQT DAGASEVASS HKTVTDAKII VQTRSEVDLL 420 DDGFRWRQVA LGGGRCNVRK HVERAAADPK AVITTYEGKH NHDVPAGRNS SHNKGGNTYS 480 KIQSMVADKP QQQLQSLEGM NYGNNEEQRP VLLRLKEEEV VV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-20 | 241 | 466 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-20 | 241 | 466 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10033000 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC470008 | 1e-55 | KC470008.1 Jatropha curcas WRKY transcription factor 06 (WRKY06) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011035813.1 | 0.0 | PREDICTED: probable WRKY transcription factor 3 | ||||
Swissprot | Q9ZQ70 | 1e-120 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | A0A2K1X5D2 | 0.0 | A0A2K1X5D2_POPTR; Uncharacterized protein | ||||
STRING | Lus10033000 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1545 | 34 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-92 | WRKY DNA-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Lus10033000 |
Publications ? help Back to Top | |||
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