PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 523aa    MW: 57017.2 Da    PI: 6.9327
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033000genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32241297259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYG K++kgse+prsYY+Ct+++Cpvkkkvers  d++++ei+Y+g+Hnhe
  Lus10033000 241 DDGYNWRKYGHKPIKGSEYPRSYYKCTHPNCPVKKKVERSG-DGQITEIIYKGQHNHE 297
                  8***************************************9.***************7 PP

2WRKY33.21e-104354633159
                  T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  31 gCpvkkkversaedpkvveitYegeHnhe 59 
                  +C+v+k+ver+a dpk+v++tYeg+Hnh+
  Lus10033000 435 RCNVRKHVERAAADPKAVITTYEGKHNHD 463
                  6***************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.398235299IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.8E-30237299IPR003657WRKY domain
SuperFamilySSF1182905.49E-26239299IPR003657WRKY domain
SMARTSM007741.1E-37240298IPR003657WRKY domain
PfamPF031062.0E-25241297IPR003657WRKY domain
SuperFamilySSF1182908.63E-10412465IPR003657WRKY domain
PROSITE profilePS5081117.431415465IPR003657WRKY domain
SMARTSM007741.4E-7420464IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-10435465IPR003657WRKY domain
PfamPF031061.8E-6435463IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MAEKRDSSPS AALPRPTITL PPRPPMDTFF SGGLSPGPMT LVSSFFSDSY PGDSDGRSFS  60
QLLAGAMASP LARPSFFPEF SPRVPAASSS TALSSTEDVA PGTTGGFGFK QSRPMNLVVP  120
RSPLFTVPPG LSPSGLLNSP GFFPPQSPFG MSHQQALAQV TAQAAIAAQS QMYMQAQFHP  180
SSIAGSAEVL PVQQSYTTAE DSHWQMPQTT SNLQNTVLEP SEFSHSEKYQ PLPPAVDKPS  240
DDGYNWRKYG HKPIKGSEYP RSYYKCTHPN CPVKKKVERS GDGQITEIIY KGQHNHELPQ  300
SNKRARDSSD QNVSISSQFK TEPVPQGQPG DANMLHEITP AYSESGRDQE SRQMDPTEQP  360
AHSSYRRAED QIANEQEAAD NAPNLKRRQT DAGASEVASS HKTVTDAKII VQTRSEVDLL  420
DDGFRWRQVA LGGGRCNVRK HVERAAADPK AVITTYEGKH NHDVPAGRNS SHNKGGNTYS  480
KIQSMVADKP QQQLQSLEGM NYGNNEEQRP VLLRLKEEEV VV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-20241466878Probable WRKY transcription factor 4
2lex_A8e-20241466878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033000
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4700081e-55KC470008.1 Jatropha curcas WRKY transcription factor 06 (WRKY06) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035813.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-120WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2K1X5D20.0A0A2K1X5D2_POPTR; Uncharacterized protein
STRINGLus100330000.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-92WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]