PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10032984

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

TCP

Protein Properties

Length: 314aa MW: 35145.7 Da PI: 6.8771

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10032984	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	95.7	8.8e-30	59	166	3	99
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ssssaseceae 76 g kdrhsk++T +g+RdRRvRls+++a++++dLq +LG+ ++sk ++WLl++ak i++l+ + Lus10032984 59 GNKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQSRLGLNQPSKVVDWLLNAAKSDIDQLPPLpffpypttttstqysttstfitnhY---------- 146 78*************************************************************7666654433322222222222220.......... PP TCP 77 sssssasnsssg........kaaksaakskk 99 + +++ ++ + + Lus10032984 147 -----------PqpphhdfwNSKFEQDQDPS 166 ...........22222223211111111122 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-27	59	160	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.262	60	118	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MHEGVDPSGR YSIRDERQEE EQKNVDIITR KKQVEAGGRT WLRVKDPRIV RVSSSAGSGN 60 KDRHSKVCTI RGLRDRRVRL SVPTAIQLYD LQSRLGLNQP SKVVDWLLNA AKSDIDQLPP 120 LPFFPYPTTT TSTQYSTTST FITNHYPQPP HHDFWNSKFE QDQDPSPFNY QAASFHQHHQ 180 SRPIYDDLQP AGSINNDETG GFHLGASGGA TLRFQPINHH HHTDTNARPP LVTLPSVLMS 240 LSSSQQQQQQ QLGVLGGCNI RMDHDDEEDQ EKEEGGSSSH EQQQFANTNF HTLLRLHSTT 300 SVVAPPSSSS SIL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-17	65	119	1	55	Putative transcription factor PCF6
5zkt_B	4e-17	65	119	1	55	Putative transcription factor PCF6

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10032984

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10032984	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1163	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	4e-35	plastid transcription factor 1

Link Out ? help Back to Top
Phytozome	Lus10032984