PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032882
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 426aa    MW: 47264.9 Da    PI: 6.554
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032882genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.62.9e-101584232373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++l+++c + +s+ d + a++l+  ls  +sp+gd++qRla++f  AL+ rl++        lp    +   + e+++a+ ++++++P+++f+hltaN
  Lus10032882  58 RQLIVRCSDLISQADYSSAHRLIGILSAASSPYGDSTQRLAHHFSSALSLRLSG-------HLPIAVVD---HREVASAYLTLNQITPFIRFTHLTAN 145
                  7899**************************************************.......44555444...679999******************** PP

         GRAS 100 qaIleav...ege.....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl..vakrle 187
                  qaIle+v   + +      ++Hi+Dfdi++G+QWp+L+qaLa+R ++ppslRiTg g+    + e+l +tg+rL+kfA++lg++f+f++l  ++ + +
  Lus10032882 146 QAILESVllgQ-QqpddqGTIHIVDFDIMHGVQWPPLMQALAER-HPPPSLRITGTGH----DPETLTRTGDRLSKFAQSLGLTFQFHPLllLHASAD 237
                  *****985541.13555599***********************9.899**********....9**************************987777999 PP

         GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerik 284
                   l +++  v pgE+laVn+++ lhrl ++ ++ +  ++++L+ +++++P+vv++ e+e+d  +s+    ++ ea+eyy  +++sle++++++s +r+ 
  Lus10032882 238 HLIPSAVTVLPGETLAVNCMFYLHRLINDFQNDDYMIRTFLRRIREMNPRVVTIGEREMDSvGSG---GGIGEAVEYYQRVLESLEETVAPTSADRAE 332
                  99*************************99999999*************************95554...799*************************** PP

         GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee......sgslvlgWkdrpLvsvSaW 373
                  vE +++++ei++vv     +      +l+ W+e+++++GF++v ls +a++qaklllr ++ s+gyr+++e         l+lgW+drpL+s+S+W
  Lus10032882 333 VEGVWFSKEIKEVVNGGRVD-----HKLRWWSEMMTSVGFRNVGLSPFAVSQAKLLLRLHYpSEGYRLDHEddddgvVSGLFLGWRDRPLFSLSSW 423
                  **************998888.....66******************************************6645555556789************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.28631397IPR005202Transcription factor GRAS
PfamPF035141.0E-9858423IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MPPQIVDHWP FTITAIAIRR LRSPPPPPLP LLPPPFPPPP PGPSSSSSSF VSSAIQVRQL  60
IVRCSDLISQ ADYSSAHRLI GILSAASSPY GDSTQRLAHH FSSALSLRLS GHLPIAVVDH  120
REVASAYLTL NQITPFIRFT HLTANQAILE SVLLGQQQPD DQGTIHIVDF DIMHGVQWPP  180
LMQALAERHP PPSLRITGTG HDPETLTRTG DRLSKFAQSL GLTFQFHPLL LLHASADHLI  240
PSAVTVLPGE TLAVNCMFYL HRLINDFQND DYMIRTFLRR IREMNPRVVT IGEREMDSVG  300
SGGGIGEAVE YYQRVLESLE ETVAPTSADR AEVEGVWFSK EIKEVVNGGR VDHKLRWWSE  360
MMTSVGFRNV GLSPFAVSQA KLLLRLHYPS EGYRLDHEDD DDGVVSGLFL GWRDRPLFSL  420
SSWHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-576342325378Protein SCARECROW
5b3h_A2e-576342324377Protein SCARECROW
5b3h_D2e-576342324377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032882
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614432.11e-135scarecrow-like protein 18
TrEMBLA0A2C9W0C41e-134A0A2C9W0C4_MANES; Uncharacterized protein
STRINGLus100328820.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129262133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.16e-96GRAS family protein