PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032748
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 574aa    MW: 63658.2 Da    PI: 8.5872
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032748genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72.1e-132313111396
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  s  l +p kf  +h   ++++++++l + +g +++v+    +k   +++l +GW  Fv++n+Lk gD+++F+l+++   el+v +
  Lus10032748 231 SYTLNIPYKFSMAHL--PACKTEIVLGTVKGATFTVNSVPtTKVHTSHTLCGGWMAFVRSNDLKIGDVCIFELVRK--YELRVFI 311
                  55699*****98885..57999***************9555777777*************************9874..4445555 PP
2B345.31.5e-14443534498
                  E-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   4 vltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++ + +v+ s  l +p +f +e+  g     +++++l +++g +W v+   + k+++ +++ +GW  Fv++ng+k g +++F+l+++   e++v++++
  Lus10032748 443 IMRKFNVSGSYTLKIPHRFSTEYlpG----FKTEIVLCNLRGGRWPVNSLPDSKGRSvHTFCGGWMAFVRDNGVKLGNTCIFELVSS--SEMRVHIHS 534
                  566667788889***********643....4568***************7755555569************************9874..445888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.53E-113482IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-73675No hitNo description
Gene3DG3DSA:2.40.330.101.4E-103986IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.2773977IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-19214314IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-20215314IPR015300DNA-binding pseudobarrel domain
CDDcd100172.44E-16217313No hitNo description
SMARTSM010191.7E-6219315IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702219315IPR003340B3 DNA binding domain
PfamPF023621.6E-10225311IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-22431536IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-23433535IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-17438534No hitNo description
PROSITE profilePS5086313.408440536IPR003340B3 DNA binding domain
PfamPF023627.3E-12440535IPR003340B3 DNA binding domain
SMARTSM010199.6E-14440536IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MGPCYAVLEE NEMENSRCPC FFETFSANLF SARLVGGLFL DHGWPTFVAD HSLECGDLLV  60
FRYDGKFCFT VQVFDASKCE KEAAFQADCS RYRNSLHEST GKKRAREEDY AVSDKISKRR  120
KNNCSGENSE CTERNESMEA LAGMSDLVDI LPKCGLVILG KASQKRNLAD QTEQSWSRSS  180
NAASSSKFKS LHENPGYGSA FSEREKRVAE SFISCYPYFV RIMKRFNING SYTLNIPYKF  240
SMAHLPACKT EIVLGTVKGA TFTVNSVPTT KVHTSHTLCG GWMAFVRSND LKIGDVCIFE  300
LVRKYELRVF ILRAGKDGPD NQSEILACNG VKVGCSATSQ RIQSHRKKSR KPSSKVGTKL  360
IKHVELCEVG DSNKSQPAVL LDGSTKHSPA TKISDSNFKT LGKGEYVEGD LHTKTGMGVK  420
MMLSLEEKAA KSFRSRFPHF VRIMRKFNVS GSYTLKIPHR FSTEYLPGFK TEIVLCNLRG  480
GRWPVNSLPD SKGRSVHTFC GGWMAFVRDN GVKLGNTCIF ELVSSSEMRV HIHSNDGGEG  540
SENQSGNSAG NNEMPLVPFS SDDHHAILDE PFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101120KKRAREEDYAVSDKISKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032748
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071730.10.0B3 domain-containing protein Os01g0723500 isoform X1
TrEMBLA0A067KQC90.0A0A067KQC9_JATCU; Uncharacterized protein
STRINGLus100327480.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-13B3 family protein