PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10032724

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 382aa MW: 42363.5 Da PI: 4.9502

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10032724	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	47.9	4.5e-15	14	118	7	128
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104 F+ t ee+ + L k ++g++l+ +v++++ + + P++Lp+ + wy F k+++ n t +g+Wk +g++ e+++ ++ +g + Lus10032724 14 FDGTPEEIF-KSLLKMMRGSTLPS-NVVDDICPFMYAPSNLPA------DIWYLFRKSAE--------NNDTGKGFWKLKGESLELFT-DSVITGWRS 94 777888988.55777899999999.89**99*****92......4699988766........446899************.999** PP NAM 105 tLvfykgrapkgektdWvmheyrl 128 tL +y+g++p+ +ktdW+m++y + Lus10032724 95 TLEYYEGKEPEVVKTDWLMQQYWV 118 ********************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	23.467	8	141	IPR003441	NAC domain
SuperFamily	SSF101941	3.01E-21	13	141	IPR003441	NAC domain
Pfam	PF02365	2.8E-8	13	116	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MCPPAQNHIA DIGFDGTPEE IFKSLLKMMR GSTLPSNVVD DICPFMYAPS NLPADIWYLF 60 RKSAENNDTG KGFWKLKGES LELFTDSVIT GWRSTLEYYE GKEPEVVKTD WLMQQYWVTE 120 KDLVESSKEK ESNSLCRVFL ERDHVDVKRE CVATPLVLDE AESQRRLITS SVCSSGSTSK 180 AEGDRIAVAD VWANLLDECF AGGHYLEMLD LAVPASSSSG TDNSSCMSIS SDEYFDTWAL 240 LREIESDSIQ DSVQKTGECK LNISTTCKPE ELTMSPRSSV SIVSTRETEL ASEQVAGTGP 300 SLSDMSEQHK DINDKAKQKQ KQQQVSRKHK LADKDKGSSS DSSHGGSSSG ASRDVKKEGS 360 KGTMKKRKNK YLCFMAFNFI F*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MCPPAQNHIA DIGFDGTPEE IFKSLLKMMR GSTLPSNVVD DICPFMYAPS NLPADIWYLF  60
RKSAENNDTG KGFWKLKGES LELFTDSVIT GWRSTLEYYE GKEPEVVKTD WLMQQYWVTE  120
KDLVESSKEK ESNSLCRVFL ERDHVDVKRE CVATPLVLDE AESQRRLITS SVCSSGSTSK  180
AEGDRIAVAD VWANLLDECF AGGHYLEMLD LAVPASSSSG TDNSSCMSIS SDEYFDTWAL  240
LREIESDSIQ DSVQKTGECK LNISTTCKPE ELTMSPRSSV SIVSTRETEL ASEQVAGTGP  300
SLSDMSEQHK DINDKAKQKQ KQQQVSRKHK LADKDKGSSS DSSHGGSSSG ASRDVKKEGS  360
KGTMKKRKNK YLCFMAFNFI F*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10032724

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10032724	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10588	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	4e-13	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Lus10032724