PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10032653 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 88aa MW: 10084.3 Da PI: 10.6509 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 62.4 | 1.4e-19 | 2 | 54 | 75 | 128 |
NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 nrat +gyWka gkd+e+ + +++l +kktLvf +gr+p g++t+Wvmhe rl Lus10032653 2 NRATGKGYWKAPGKDREIRR-DNQLLAMKKTLVFLSGRSPGGQRTNWVMHEHRL 54 8******************9.999***************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.603 | 1 | 77 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.29E-21 | 2 | 68 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-8 | 2 | 54 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MNRATGKGYW KAPGKDREIR RDNQLLAMKK TLVFLSGRSP GGQRTNWVMH EHRLVDEELE 60 RIGTFAGENR VGRETQHHLE SQTREPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-15 | 2 | 56 | 90 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-15 | 2 | 56 | 90 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-15 | 2 | 56 | 90 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-15 | 2 | 56 | 90 | 144 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-15 | 2 | 56 | 93 | 147 | NAC domain-containing protein 19 |
3swm_B | 2e-15 | 2 | 56 | 93 | 147 | NAC domain-containing protein 19 |
3swm_C | 2e-15 | 2 | 56 | 93 | 147 | NAC domain-containing protein 19 |
3swm_D | 2e-15 | 2 | 56 | 93 | 147 | NAC domain-containing protein 19 |
3swp_A | 2e-15 | 2 | 56 | 93 | 147 | NAC domain-containing protein 19 |
3swp_B | 2e-15 | 2 | 56 | 93 | 147 | NAC domain-containing protein 19 |
3swp_C | 2e-15 | 2 | 56 | 93 | 147 | NAC domain-containing protein 19 |
3swp_D | 2e-15 | 2 | 56 | 93 | 147 | NAC domain-containing protein 19 |
4dul_A | 2e-15 | 2 | 56 | 90 | 144 | NAC domain-containing protein 19 |
4dul_B | 2e-15 | 2 | 56 | 90 | 144 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10032653 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012081000.1 | 1e-31 | NAC domain-containing protein 78 isoform X1 | ||||
Refseq | XP_012081001.1 | 9e-32 | NAC domain-containing protein 82 isoform X2 | ||||
Refseq | XP_021688627.1 | 8e-32 | NAC domain-containing protein 41-like isoform X2 | ||||
Swissprot | Q9SQX9 | 2e-26 | NAC50_ARATH; NAC domain containing protein 50 | ||||
TrEMBL | R4NFV5 | 2e-30 | R4NFV5_JATCU; NAC transcription factor 043 | ||||
STRING | Lus10032653 | 1e-58 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 1e-28 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Lus10032653 |
Publications ? help Back to Top | |||
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