PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032580
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 395aa    MW: 43332 Da    PI: 8.5521
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032580genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-3071128260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgy+WrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ ++k+++i+Y+g+H+h+k
  Lus10032580  71 DDGYHWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-EGKITDIIYKGTHDHPK 128
                  8****************************************.***************85 PP
2WRKY103.41.3e-32221279159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+Ct  gCpv+k+ver+++d k+v++tYeg+Hnh+
  Lus10032580 221 LDDGYKWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDLKAVITTYEGKHNHD 279
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-2664129IPR003657WRKY domain
PROSITE profilePS5081123.14665129IPR003657WRKY domain
SuperFamilySSF1182903.4E-2466129IPR003657WRKY domain
SMARTSM007749.0E-3270128IPR003657WRKY domain
PfamPF031069.8E-2471127IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-36206281IPR003657WRKY domain
SuperFamilySSF1182909.81E-29213281IPR003657WRKY domain
PROSITE profilePS5081137.849216281IPR003657WRKY domain
SMARTSM007743.0E-37221280IPR003657WRKY domain
PfamPF031065.9E-25222279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MQSYGTSQSQ IQSVSSLSSP KAEMVTTSNE LRLNPLHMVS SGATAPVQDE AEEQNQIGNA  60
NSGTTNSMIS DDGYHWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HEGKITDIIY  120
KGTHDHPKPQ ISRRYTTVGL FPVQEGTPDA SHTTGKNGGT LELSLVAATG EILEGPEDDE  180
DPFFSKRRKM DSASFDVTPV AVKPIREPRV VVQTLSEVDI LDDGYKWRKY GQKVVRGNPN  240
PRSYYKCTNV GCPVRKHVER ASHDLKAVIT TYEGKHNHDV PTARTSSNAA AGGSAAIMSS  300
RLRIRSDESE TISLDLGVGM YSESSDHQQQ PLLSQNGQSS GSSFSRAANH HGVHMNQYVS  360
GQTPNEARSV GLRALKHRFS YHYPPNAGTL LSGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-3564281877Probable WRKY transcription factor 4
2lex_A1e-3564281877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021638005.11e-162probable WRKY transcription factor 20 isoform X3
RefseqXP_021638006.11e-162probable WRKY transcription factor 20 isoform X3
RefseqXP_021638007.11e-162probable WRKY transcription factor 20 isoform X4
RefseqXP_021638008.11e-162probable WRKY transcription factor 20 isoform X4
RefseqXP_021638009.11e-162probable WRKY transcription factor 20 isoform X5
SwissprotQ93WV01e-123WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLM9TMC31e-158M9TMC3_JATCU; WRKY transcription factor 09
STRINGLus100325800.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-121WRKY family protein