PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10032498 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 23545.4 Da PI: 6.0663 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.1e-16 | 108 | 158 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +g+++AeIrdp+ r++lg+fg+ +Aa+a++ a+ +++g Lus10032498 108 KFRGVRKRP-WGKYAAEIRDPTRK--GSRVWLGTFGSDVDAARAYDFAAFEMRG 158 89*******.**********8542..4**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 107 | 167 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-11 | 108 | 158 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-21 | 108 | 167 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-33 | 108 | 172 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.00E-26 | 108 | 166 | No hit | No description |
PROSITE profile | PS51032 | 23.512 | 108 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-12 | 109 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-12 | 148 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MSTLEESTAL QLIKQHLLDD GSSSLSYSSP AAAFISNFSS LPVKIKEEED QSTSPVRSPE 60 SELDCFFFQQ QSPEFLRDQT TSPKSAASCS PPLLVQSDEK VQEESGRKFR GVRKRPWGKY 120 AAEIRDPTRK GSRVWLGTFG SDVDAARAYD FAAFEMRGRK AILNFPLEAG KYDLPACTAS 180 RKRRKLKNEA AAAAPVNWED EDQKSLVWAL E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-25 | 106 | 167 | 3 | 64 | ATERF1 |
3gcc_A | 4e-25 | 106 | 167 | 3 | 64 | ATERF1 |
5wx9_A | 2e-24 | 94 | 168 | 1 | 74 | Ethylene-responsive transcription factor ERF096 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10032498 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU829753 | 0.0 | EU829753.1 Linum usitatissimum clone LU0011F06 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021616767.1 | 1e-48 | ethylene-responsive transcription factor ERF107-like | ||||
Refseq | XP_021687037.1 | 5e-48 | ethylene-responsive transcription factor ERF107-like | ||||
TrEMBL | A0A1L6CB05 | 1e-47 | A0A1L6CB05_9ROSI; AP2/ERF domain-containing transcription factor | ||||
TrEMBL | A0A1L6CB78 | 1e-47 | A0A1L6CB78_VERFO; AP2/ERF domain-containing transcription factor | ||||
STRING | Lus10032498 | 1e-153 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 8e-43 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10032498 |