PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10032423

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Nin-like

Protein Properties

Length: 472aa MW: 52234.9 Da PI: 6.2751

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10032423	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	46.4	7.6e-15	358	384	26	52
RWP-RK 26 gvclTvLKriCRqyGIkRWPhRkiksl 52 +vc+T++K iCR+yGI+RWP+Rki+++ Lus10032423 358 NVCPTTMKGICRHYGISRWPSRKINKV 384 7************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	10.285	316	404	IPR003035	RWP-RK domain
Pfam	PF02042	9.2E-12	358	384	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MTELEIADIS KHQSQLHHTL LITDSQEPLM MDLDFDLYSS SWPLDHFPFP PSHPTSPLFL 60 SNSDYSQPCF PLWSFSAAAD DDDDDNSPPS DTAAVHDYPL FITCNFKPMP SPMDSSDGHC 120 SIKERMTRAL RYLKQSTDQQ HILAQIWAPV KKIGGSRFVL TTSEQPFVLD PHCNGLNQYR 180 MVSLLYTFSV DDDDEETDGA AGDDHLGLSG RGFHQKLPEW TPNVQYYSSK EYSRLDHALH 240 YNVRGSLALP VFETDSGGKS LSCVGVLELE MTSQVVNYAP EVDKVCKALQ AVNLKSSEVL 300 DHPKPRVKLP SYDILVAVYH GKNALAEIQE ILTLACETHG LPSAHVWVPC MHRCVLANVC 360 PTTMKGICRH YGISRWPSRK INKVNRSLTK LQKVIESVRV IPPDASFHLG QDSTKSGNST 420 SHGSCEGSPA ATKDQPLNSA SPVRDHEEKS VIVKATYKQD MIRSGSGRGV G*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MTELEIADIS KHQSQLHHTL LITDSQEPLM MDLDFDLYSS SWPLDHFPFP PSHPTSPLFL  60
SNSDYSQPCF PLWSFSAAAD DDDDDNSPPS DTAAVHDYPL FITCNFKPMP SPMDSSDGHC  120
SIKERMTRAL RYLKQSTDQQ HILAQIWAPV KKIGGSRFVL TTSEQPFVLD PHCNGLNQYR  180
MVSLLYTFSV DDDDEETDGA AGDDHLGLSG RGFHQKLPEW TPNVQYYSSK EYSRLDHALH  240
YNVRGSLALP VFETDSGGKS LSCVGVLELE MTSQVVNYAP EVDKVCKALQ AVNLKSSEVL  300
DHPKPRVKLP SYDILVAVYH GKNALAEIQE ILTLACETHG LPSAHVWVPC MHRCVLANVC  360
PTTMKGICRH YGISRWPSRK INKVNRSLTK LQKVIESVRV IPPDASFHLG QDSTKSGNST  420
SHGSCEGSPA ATKDQPLNSA SPVRDHEEKS VIVKATYKQD MIRSGSGRGV G*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10032423

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453644.1	1e-109	protein NLP7
Swissprot	Q84TH9	1e-100	NLP7_ARATH; Protein NLP7
TrEMBL	A0A218XKG3	1e-108	A0A218XKG3_PUNGR; Uncharacterized protein
STRING	Lus10032423	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	6e-92	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Lus10032423

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]