PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032413
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 321aa    MW: 36074.1 Da    PI: 7.534
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032413genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772.1e-2476176198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++ 
  Lus10032413  76 FCKVLTASDTSTHGGFSVLRKHATEClrpldmtQ--QTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGETGD 169
                  99****************************9643..445569************************************************..348999 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l+v+v+r
  Lus10032413 170 LRVGVRR 176
                  9****98 PP
2Auxin_resp98.31.1e-32202281183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+ t+++F v+Y+Pr+  s+F++ ++++++a+ +k++vG Rfkm+fe+eds+err+sGt+vgv d++p  W +SkWr+Lk
  Lus10032413 202 ASHAVGTQTMFVVYYKPRT--SQFIIGLNRYLEAVGNKFAVGKRFKMRFEGEDSPERRFSGTIVGVDDFSP-YWAESKWRCLK 281
                  6899**************6..9*************************************************.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-3967205IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-3969191IPR015300DNA-binding pseudobarrel domain
CDDcd100174.36E-2074176No hitNo description
SMARTSM010193.4E-2276178IPR003340B3 DNA binding domain
PROSITE profilePS5086311.99876178IPR003340B3 DNA binding domain
PfamPF023621.5E-2276176IPR003340B3 DNA binding domain
PfamPF065074.7E-30202281IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEQLEASTNQ ELNQRAPLFN LPSKILCRVI NINLLAEPET DEVYAQITLI PELDQSEPTS  60
PDLCPTETPR PLVHSFCKVL TASDTSTHGG FSVLRKHATE CLRPLDMTQQ TPTQELVAKD  120
LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDSF VFLRGETGDL RVGVRRVALQ  180
QSSMPTSVIS SQSMHLGVLA TASHAVGTQT MFVVYYKPRT SQFIIGLNRY LEAVGNKFAV  240
GKRFKMRFEG EDSPERRFSG TIVGVDDFSP YWAESKWRCL KVQWDEPASI PRPDKVSPWE  300
IEPFEASCTT NTAPTTPTLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-158130649357Auxin response factor 1
4ldw_A1e-158130649357Auxin response factor 1
4ldw_B1e-158130649357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032413
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021276074.10.0auxin response factor 9 isoform X1
RefseqXP_021276101.10.0auxin response factor 9 isoform X4
SwissprotQ9XED81e-169ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0B0NAI60.0A0A0B0NAI6_GOSAR; Auxin response factor
TrEMBLA0A0D2QPW50.0A0A0D2QPW5_GOSRA; Auxin response factor
TrEMBLA0A0D2RIS10.0A0A0D2RIS1_GOSRA; Auxin response factor
TrEMBLA0A1U8NQU80.0A0A1U8NQU8_GOSHI; Auxin response factor
STRINGLus100324130.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32813366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.11e-171auxin response factor 9