PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10032389 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 137aa MW: 15654.8 Da PI: 4.4501 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33 | 1e-10 | 16 | 98 | 11 | 97 |
HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 l+ ++l+lp +f++++ g+ +++ tl + +We+++ + +s+ + ++GW+ F L g ++ Fk++g +ef +++vf Lus10032389 16 LQAKQLMLPMSFTRSYwGNAPPR---ATLLLPGRGRWEMEVFKDEQSRVWLQGAGWEAFSGFYSLAHGHILQFKYHGGTEF--FLRVF 98 34467***********7666555...8999999********7677776677779*********************987666..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-14 | 5 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.333 | 6 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.001 | 7 | 101 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-12 | 7 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-7 | 16 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.37E-8 | 19 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MARVVRFPKV VIGESLQAKQ LMLPMSFTRS YWGNAPPRAT LLLPGRGRWE MEVFKDEQSR 60 VWLQGAGWEA FSGFYSLAHG HILQFKYHGG TEFFLRVFAM NMSEIKYPPP DLTSLDQEDD 120 PVDDSDDEEE LPDEII* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10032389 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10032389 | 6e-97 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10032389 |