PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032353
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 331aa    MW: 35940.4 Da    PI: 4.7778
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032353genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19123172255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+W+AeIrdp     r  r++lg++ taeeAa+ +++a+++l+g
  Lus10032353 123 KFRGVRQRP-WGKWAAEIRDPL----RrVRVWLGTYNTAEEAAAVYDNAALQLRG 172
                  89*******.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-29122180IPR001471AP2/ERF domain
SMARTSM003802.5E-35123186IPR001471AP2/ERF domain
CDDcd000186.40E-30123179No hitNo description
PfamPF008471.7E-12123172IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21123181IPR016177DNA-binding domain
PROSITE profilePS5103223.499123180IPR001471AP2/ERF domain
PRINTSPR003675.2E-10124135IPR001471AP2/ERF domain
PRINTSPR003675.2E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDTVQFTKLL RRSSFSDDSK PPTTQVVRIS VTDPDATDSS SDEEGNGFLR RRVKRFVSEI  60
TVESSSSSSL HSCSVSGGSD EHGAALGANN NRRMRRRKSG SSKANNKSSK DLSVRTSAPA  120
VRKFRGVRQR PWGKWAAEIR DPLRRVRVWL GTYNTAEEAA AVYDNAALQL RGPDALTNFS  180
APVVAATAPN ATTASSDYNS GEESRNEKVG LRSPVSTLRF PSPTEEAESA ALPAAAKVKE  240
EYDCSEISEF SSSLFSDSAA YDFKSSMRDI FDETNLAFDE GFLNADSSDV VFMDAAVEAA  300
DFGFGLSSFR TEDCFQDIGD LFWSDSLLSV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18122179462ATERF1
3gcc_A2e-18122179462ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196RRMRRR
29398MRRRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032353
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621824.14e-88ethylene-responsive transcription factor CRF2
TrEMBLA0A1L6CAY51e-86A0A1L6CAY5_9ROSI; AP2/ERF domain-containing transcription factor
TrEMBLA0A1L6CB661e-86A0A1L6CB66_VERFO; AP2/ERF domain-containing transcription factor
TrEMBLA0A2C9WHR71e-86A0A2C9WHR7_MANES; Uncharacterized protein
STRINGLus100323530.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-34cytokinin response factor 2