PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032238
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 403aa    MW: 46851.7 Da    PI: 6.9839
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032238genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.25.4e-5671361129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeelv++yL+kk+++k+++l +vik+vd+yk+ePwdL++  ++ + e+++wyfFs++dkky+tg+r+nratk+g+Wkatg+dk++++ 
  Lus10032238   7 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKDVDLYKIEPWDLQElcRIGTeEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYV- 102
                  69****************************.9***************954555542556**************************************. PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  +++lvg++ktLvfykgrap+g+k+dW+mheyrle
  Lus10032238 103 RHRLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                  999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-625158IPR003441NAC domain
PROSITE profilePS5100559.5857158IPR003441NAC domain
PfamPF023651.2E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MNTFSHVPPG FRFHPTDEEL VDYYLRKKIA SKRIDLDVIK DVDLYKIEPW DLQELCRIGT  60
EEQNDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YVRHRLVGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLEINEN GAPQASEEGW VVCRVFKKRL PTTMRRYGDQ YDSPCWYEDQ  180
SSFMHELDSP RQISHSHHQP YPSPPSSYLH HHHHHHQQQQ QHYLHCKQEL DQLQYNMTHN  240
HHQNNEPSFL QLPQLESPKV PTSNTNCNNN NSSSSSMVPN YSYDKIPQEE VLHIQQSHHH  300
HQQQQQPNLG SFHNSNAMSD QEQVVATDWR VLDKFVASQL SNEAGNSSAS KEATHVNNVS  360
PSSSFHVAAE NVGVTNDESK RSDTLEEYAS TLTSTCEIDL WK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-51615914169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032238
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603634.11e-174NAC domain-containing protein 7-like
SwissprotQ9FWX21e-150NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A251LEQ31e-173A0A251LEQ3_MANES; Uncharacterized protein
STRINGLus100322380.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-139NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]