PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032159
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 388aa    MW: 43402.7 Da    PI: 6.6655
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032159genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.5e-1116102896
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  +  lk+grl+++ +f++e+g+    s +++l+ ++g++W++ l      +++r++l++G  +F +   +++g  ++F++ g+s+f     v
  Lus10032159  16 PEDLKQGRLRISEEFVKEYGHL--LSDEVMLKVPDGKVWKIGLAKqiGCRKERIWLKAGFCRFLEYYSIDAGYLLTFEFGGSSRF--QALV 102
                  6678999************966..888****************7754444456*************************9988888..4444 PP
2B330.66.1e-10285379796
                  .-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS......-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesg......rsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  + +  +sg++ lp + +++  + +    +++t++  +g       + ev+l +    ++++g+ ++  GW +F+k+++L  gD+++F+l++ ++   v
  Lus10032159 285 TTSQANSGNMNLPIRITADGyMRE--DLQKMTMRVFDGeeeimvDEREVNL-FerkgKQYGGKKYI-CGWISFCKDHRLVNGDVCLFELVKPQTN--V 376
                  445555566889988875544333..2334444444444467776666666.31111444444444.5********************9874443..4 PP

                  EEE CS
           B3  94 vkv 96 
                  + v
  Lus10032159 377 FNV 379
                  444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-167105IPR015300DNA-binding pseudobarrel domain
CDDcd100174.62E-108104No hitNo description
SuperFamilySSF1019361.06E-158108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.8699106IPR003340B3 DNA binding domain
SMARTSM010192.7E-810106IPR003340B3 DNA binding domain
PfamPF023621.7E-816100IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-12273383IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-12273384IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0086280385IPR003340B3 DNA binding domain
CDDcd100172.06E-6280382No hitNo description
PfamPF023621.2E-7284378IPR003340B3 DNA binding domain
PROSITE profilePS508637.993349385IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MAVNDLSKHF WQIIYPEDLK QGRLRISEEF VKEYGHLLSD EVMLKVPDGK VWKIGLAKQI  60
GCRKERIWLK AGFCRFLEYY SIDAGYLLTF EFGGSSRFQA LVFDSPACEI VYPISSSPDS  120
DSDSDSDSDF DFDEPCFRHG NRGKGVVAAA AGKNGGNASS SQKKQKQEQP RQYFPDLDID  180
DSDSDSSDSD PDFCSPDFRG RNRGKQVAPA KNNGGNASSS RPPNAAGASF TNAEELWSRL  240
EKSTIIKTKG FNSRLMKLPE ASQRAISRAF DISNPKNPSF LVDITTSQAN SGNMNLPIRI  300
TADGYMREDL QKMTMRVFDG EEEIMVDERE VNLFERKGKQ YGGKKYICGW ISFCKDHRLV  360
NGDVCLFELV KPQTNVFNVR KFHAGCG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032159
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100321590.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-17B3 family protein