PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031960
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26397.3 Da    PI: 10.0433
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031960genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.44.4e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien++nrqvt+skRrng++KKA+EL vLCda+v++i+fsst+kl+e++s
  Lus10031960  9 KRIENSTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTDKLHEFIS 59
                 79***********************************************86 PP
2K-box85.11.5e-2871169199
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  yq++ g++ +++++e++q +l+kLk+ ++ L++e+R+++Ge+L++L+l +++ L  ++++++k iR++Kn+++ +qie+ +kk ++++ ++++L + +
  Lus10031960  71 YQRTLGVDIWTTHYEKMQDHLKKLKEVNRDLRKEIRRRMGECLNDLELDQMRALDMEMDNAVKIIRERKNQVISNQIERHKKKVRNVEAIHRNLLHAF 168
                  67788899**************************************************************************************9887 PP

        K-box  99 e 99 
                   
  Lus10031960 169 R 169
                  5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.693161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-40160IPR002100Transcription factor, MADS-box
CDDcd002653.22E-38280No hitNo description
PRINTSPR004044.4E-28323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-36395IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-1882167IPR002487Transcription factor, K-box
PROSITE profilePS5129714.69884174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MARGKIQIKR IENSTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMFSS TDKLHEFISP  60
AATTKGMLDQ YQRTLGVDIW TTHYEKMQDH LKKLKEVNRD LRKEIRRRMG ECLNDLELDQ  120
MRALDMEMDN AVKIIRERKN QVISNQIERH KKKVRNVEAI HRNLLHAFRE READPHYGLV  180
DNGGDYEPAV VGFPTGGSRV FALRLNHLDL HTATTATGSD LTTFHLLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-15159159MEF2C
5f28_B1e-15159159MEF2C
5f28_C1e-15159159MEF2C
5f28_D1e-15159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031960
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313871.11e-112floral homeotic protein PMADS 1-like
RefseqNP_001314589.11e-112floral homeotic protein PMADS 1-like
RefseqXP_012447738.11e-112PREDICTED: floral homeotic protein PMADS 1
SwissprotP237061e-110DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA0A0P0I7J51e-114A0A0P0I7J5_MERAN; Apetala 3-like protein
STRINGLus100319601e-170(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-94MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]