PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031937
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 333aa    MW: 37916.9 Da    PI: 4.5412
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031937genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.67.3e-21101332118
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvka....eekewyfFskrdkkyatgkrknra..tksgyWkatgkdkev 92 
                  p+GfrFhP+deelv  yL kk++g++l+++++++++d+y ++ePwd+ +k+++    +++++yfF++ +kk+++ kr  r+  t+ ++W++  + ++ 
  Lus10031937  10 PAGFRFHPKDEELVLLYLLKKLRGRPLPCASAVRDCDLYgELEPWDIWSKYHHhgddDDEDLYFFTPLKKKKQNFKRFVRSvgTHGATWHEENTGEPG 107
                  89***************************999*****99457*****742222233355588****************9943477889**88888888 PP

          NAM  93 lskkgelvglkktLvfykgrapkgek 118
                   s++g++v+  k   + ++++++ +k
  Lus10031937 108 ESHDGKVVWELKRYKYLSKKDSEKKK 133
                  88789999988888888665555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-236192IPR003441NAC domain
PROSITE profilePS5100521.3079193IPR003441NAC domain
PfamPF023652.9E-1110167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEFDDGLGRP AGFRFHPKDE ELVLLYLLKK LRGRPLPCAS AVRDCDLYGE LEPWDIWSKY  60
HHHGDDDDED LYFFTPLKKK KQNFKRFVRS VGTHGATWHE ENTGEPGESH DGKVVWELKR  120
YKYLSKKDSE KKKKRKRGQD YTTDPDHDHD DEGVKEGGGW FLDEYKLKDE EIPYLGLDRT  180
AVNSLVVCRL RKAKEDSKKK KNGKKRRKVI RYLDDDDAAA EQEQVVVGTD QNTCDSNKEI  240
TGVVTCPVVV EDENVVGGEG SSGLIQDWGE DEILKLDELL SSDDGDLNLE YTTTGSSAGD  300
VMVIPQEEEE EEEETQGTLD DFFTGLGDFL HF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135KKKKRK
2130136KKKKRKR
3203207KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031937
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100319370.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133