PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10031928

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 530aa MW: 55360.5 Da PI: 9.264

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10031928	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.0004	200	222	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Lus10031928 200 WKCDKCSKRYAVQSDWKAHSKTC 222 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.48E-5	187	221	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.3E-5	188	221	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MATSSSSSVP FFGMSREELD QNLQQQMKQQ SAAGGGGGGG GVIPNHHHHL QSLFHHSSSP 60 FLTNNNSSPS PSSSSLLTGV AQQLHHQHQP PPTHLPAANS SSAATQPPPK KKRNQPGNPS 120 KSGRGSDCFV TKDADGDQQV HMRAKEQQGS SEAQSNKEVV KRKVYLCPEP TCVHHDPSRA 180 LGDLTGIKKH YYRKHGEKKW KCDKCSKRYA VQSDWKAHSK TCGTREYRCD CGTLFSRRDS 240 FITHRAFCDA LAQESARNPP PPSLSSIGSH LYAGGGAANN MSLGISSSSI THDHTAADIL 300 RLGGGGGGGG GGGGQFDHLL PPTPSLGGGG SSSFRNPHLS SSSSAAAFFM QDSDHGGHHQ 360 SQSNYQQYHH ALLQQFSAAA DPNNTGGSGG NNNHNNNNLF NLGFLPNSST SIDSFNGGGG 420 GEVGGDHHHN QMMGLVGSSS STSTVPSLFN SSIHNHQMSN MVAAHMSATA LLQKAAQMGS 480 TTSSNPNSTT SASLLRSAFG GGGGLSNTTN ITAHNKNKKS SSSSSLCGL*

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MATSSSSSVP FFGMSREELD QNLQQQMKQQ SAAGGGGGGG GVIPNHHHHL QSLFHHSSSP  60
FLTNNNSSPS PSSSSLLTGV AQQLHHQHQP PPTHLPAANS SSAATQPPPK KKRNQPGNPS  120
KSGRGSDCFV TKDADGDQQV HMRAKEQQGS SEAQSNKEVV KRKVYLCPEP TCVHHDPSRA  180
LGDLTGIKKH YYRKHGEKKW KCDKCSKRYA VQSDWKAHSK TCGTREYRCD CGTLFSRRDS  240
FITHRAFCDA LAQESARNPP PPSLSSIGSH LYAGGGAANN MSLGISSSSI THDHTAADIL  300
RLGGGGGGGG GGGGQFDHLL PPTPSLGGGG SSSFRNPHLS SSSSAAAFFM QDSDHGGHHQ  360
SQSNYQQYHH ALLQQFSAAA DPNNTGGSGG NNNHNNNNLF NLGFLPNSST SIDSFNGGGG  420
GEVGGDHHHN QMMGLVGSSS STSTVPSLFN SSIHNHQMSN MVAAHMSATA LLQKAAQMGS  480
TTSSNPNSTT SASLLRSAFG GGGGLSNTTN ITAHNKNKKS SSSSSLCGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-33	196	257	3	64	Zinc finger protein JACKDAW
5b3h_F	4e-33	196	257	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10031928

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006379802.2	1e-119	protein indeterminate-domain 5, chloroplastic
Refseq	XP_006379803.2	1e-119	protein indeterminate-domain 5, chloroplastic
Refseq	XP_006379804.2	1e-119	protein indeterminate-domain 5, chloroplastic
Refseq	XP_024463340.1	1e-119	protein indeterminate-domain 5, chloroplastic
Refseq	XP_024463341.1	1e-119	protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A2K1ZH36	1e-118	A0A2K1ZH36_POPTR; Uncharacterized protein
STRING	Lus10031928	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14580.2	2e-75	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Lus10031928