PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10031721

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 321aa MW: 37424.6 Da PI: 5.87

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10031721	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.1	2.8e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ ++ +ee+ ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s Lus10031721 7 VPPGFRFHPTDEELVDYYLRKKVNSRRIDL-DVIKDVDLYKIEPWDLQElcRIGSEEQsEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYS- 102 69**************************.9***********954555554445**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 k+el+g++ktLvfy+grap+g+k+dW+mheyrle Lus10031721 103 KHELIGMRKTLVFYQGRAPNGQKSDWIMHEYRLE 136 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.26E-61	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	60.071	7	156	IPR003441	NAC domain
Pfam	PF02365	5.3E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MNSFCHVPPG FRFHPTDEEL VDYYLRKKVN SRRIDLDVIK DVDLYKIEPW DLQELCRIGS 60 EEQSEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKAI YSKHELIGMR KTLVFYQGRA 120 PNGQKSDWIM HEYRLETDEN AAPQEEGWVV CRVFKKRITT MRKMNDHDVS SCNWYVDDQL 180 SSSSFMHHDN SPDQTTSTTS HPPPPPPSLP LHHHLYNTSS SCKKEHFPLP RHQDQYFLQL 240 PLLQSPKPPP PTASPYGMET NNMLDGQVTD WRVLDKFVAS QLSQGDQDEE EEQEDRDQNR 300 IELAGSTLDD RDTDQIDMWK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-49	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10031721

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019258894.1	1e-136	PREDICTED: NAC domain-containing protein 7-like
Refseq	XP_025014619.1	1e-136	NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-120	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A314LF71	1e-135	A0A314LF71_NICAT; Nac domain-containing protein 7
TrEMBL	B9R9R7	1e-135	B9R9R7_RICCO; NAC domain-containing protein, putative
STRING	Lus10031721	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-105	NAC 007

Link Out ? help Back to Top
Phytozome	Lus10031721

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]