PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10031665 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 149aa MW: 16860.4 Da PI: 10.5461 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91 | 5.9e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ien++ rqvtfskRrng+lKKA+ELSvLCdaev v++fs++g+lye+ss Lus10031665 10 KIENTTSRQVTFSKRRNGLLKKANELSVLCDAEVGVVVFSQRGRLYEFSS 59 69**********************************************96 PP | |||||||
2 | K-box | 50.4 | 9.8e-18 | 85 | 145 | 11 | 71 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 + +++l+qe+a L ++ie Lq + R+llGe+Les++l+e++ ++Le+sl+k+R +K + Lus10031665 85 SCIQQQLKQESASLANKIELLQASTRRLLGEGLESCTLEEIKDTSDKLERSLTKVRLRKVR 145 445799****************************************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.202 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.8E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.13E-38 | 3 | 72 | No hit | No description |
SuperFamily | SSF55455 | 9.94E-32 | 3 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.4E-14 | 87 | 144 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.775 | 88 | 148 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MVRGKVEMRK IENTTSRQVT FSKRRNGLLK KANELSVLCD AEVGVVVFSQ RGRLYEFSSH 60 GMDKTIARYR KYATVEINRS DSAASCIQQQ LKQESASLAN KIELLQASTR RLLGEGLESC 120 TLEEIKDTSD KLERSLTKVR LRKVRTTF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_R | 1e-18 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-18 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
5f28_A | 1e-18 | 1 | 82 | 1 | 82 | MEF2C |
5f28_B | 1e-18 | 1 | 82 | 1 | 82 | MEF2C |
5f28_C | 1e-18 | 1 | 82 | 1 | 82 | MEF2C |
5f28_D | 1e-18 | 1 | 82 | 1 | 82 | MEF2C |
6byy_A | 1e-18 | 1 | 82 | 1 | 82 | MEF2 CHIMERA |
6byy_B | 1e-18 | 1 | 82 | 1 | 82 | MEF2 CHIMERA |
6byy_C | 1e-18 | 1 | 82 | 1 | 82 | MEF2 CHIMERA |
6byy_D | 1e-18 | 1 | 82 | 1 | 82 | MEF2 CHIMERA |
6bz1_A | 9e-19 | 1 | 83 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 9e-19 | 1 | 83 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 9e-19 | 1 | 83 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 9e-19 | 1 | 83 | 1 | 83 | MEF2 CHIMERA |
6c9l_A | 1e-18 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-18 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-18 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-18 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-18 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-18 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10031665 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018461087.1 | 4e-58 | PREDICTED: MADS-box protein AGL42 isoform X3 | ||||
Refseq | XP_027339462.1 | 9e-58 | MADS-box protein SOC1-like isoform X2 | ||||
Swissprot | Q9FIS1 | 7e-57 | AGL42_ARATH; MADS-box protein AGL42 | ||||
TrEMBL | Q0WRE2 | 7e-56 | Q0WRE2_ARATH; AGAMOUS-like 42 | ||||
STRING | Lus10031665 | 1e-103 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF666 | 30 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 3e-59 | AGAMOUS-like 42 |
Link Out ? help Back to Top | |
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Phytozome | Lus10031665 |