PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031584
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CO-like
Protein Properties Length: 459aa    MW: 50646.9 Da    PI: 6.8445
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031584genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.96.7e-0684126339
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                  e+ C+ ++  ++  +C+++   lC +C    H+       H++
  Lus10031584  84 EPLCEFCNVMKAVVYCKSDLARLCLQCDGLVHSAnslsrrHQR 126
                  789*****988****************9999955666667765 PP
2CCT56.69e-20402445144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R  a++RY eK+ktR F KkirY+sRKa+A++R+ vKGrFvk+ 
  Lus10031584 402 RFLAKMRYMEKKKTRMFGKKIRYASRKARADTRKCVKGRFVKAG 445
                  56689************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.4E-1182129IPR000315B-box-type zinc finger
PROSITE profilePS501199.07282129IPR000315B-box-type zinc finger
CDDcd000211.05E-485129No hitNo description
PROSITE profilePS5101713.374402444IPR010402CCT domain
PfamPF062037.3E-15404444IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MPTILPANAP AQDLKLAHQP VQIHTNKKIT TYLGENPPFH ADFLELLVEW SKTIPIRSWI  60
PVPPKLGFFP PFQIRIKERG GKMEPLCEFC NVMKAVVYCK SDLARLCLQC DGLVHSANSL  120
SRRHQRSLLC DKCNSQPASA MCLVEKLSVC QGCDCSIANG CSSLGHRLHV LNYYTGCPSS  180
SEFMGLWSSV LEFPANELNS CSSRFEPWMA PPPPMIPPNV SYISYNRDQV SFPTVESNVP  240
KVQCEQGSSV VENLGLCDDE DLCDGLNIEG VQLSLEHSDE IFGFEDVGKE CSMIESNLSF  300
KESKISSIEN VIEPSHVAGS NNLMLAVSGG TTNCFYMNPN CNRNISSLGF PSETAAKVHS  360
SISLSMSGGS SVADYQDCEL SPAFLSDESS PWESITGGPH ARFLAKMRYM EKKKTRMFGK  420
KIRYASRKAR ADTRKCVKGR FVKAGEAFDY NPLPRSDF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031584
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021675842.11e-127putative zinc finger protein CONSTANS-LIKE 11
TrEMBLA0A3N7FCZ81e-122A0A3N7FCZ8_POPTR; Uncharacterized protein
STRINGLus100315840.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70521923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.15e-70B-box type zinc finger protein with CCT domain